Protein Info for AMB_RS02700 in Magnetospirillum magneticum AMB-1

Annotation: carboxypeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 703 transmembrane" amino acids 72 to 96 (25 residues), see Phobius details PF00912: Transgly" amino acids 129 to 294 (166 residues), 210.2 bits, see alignment E=1.7e-66 TIGR02074: penicillin-binding protein, 1A family" amino acids 132 to 649 (518 residues), 593.1 bits, see alignment E=2.8e-182 PF00905: Transpeptidase" amino acids 380 to 610 (231 residues), 114.2 bits, see alignment E=7e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0524)

Predicted SEED Role

"Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-)" in subsystem Peptidoglycan Biosynthesis or Type IV pilus (EC 2.4.1.129, EC 3.4.-.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.1.129, 3.4.-.-

Use Curated BLAST to search for 2.4.1.129 or 3.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W9Z7 at UniProt or InterPro

Protein Sequence (703 amino acids)

>AMB_RS02700 carboxypeptidase (Magnetospirillum magneticum AMB-1)
MAVPPSRPKGAGNPFKLSIDPADRLLPSGSGGEPPPPREPPPPRGRAPKEPKKPKAPKKG
GSGNGRKWGKRLLVWGLTLAIWIGIGLAGVVAYYALDLPDIDRMTAQTRRPSVVFQSVEG
EIFAAYGDLYGEPLDLGEMSPFIAQAVLATEDRRFYSHWGVDPIGLARALFVNLRAGHTV
QGGSTITQQLAKNLFLTPDRNMKRKVQEVLMALWLEKRFSKEQILGLYLNRVYLGSGTFG
VDAAAKRYFDVSARKVDVYQAAVLAGLLKAPSRYSPLNDPEASRKRTSDVLANMVKAGYI
DQKTADNVQVTGAAQLVRRPIPAGRYFADWLMANLDQFGEVAGKDIVVHTTMDIALQRKV
EADLKTMMAGPGAKANASQGAVVVMSPDGAIRALTGGKDYDDSQFNRATQGLRQPGSSFK
PFVYLTAMEMGRTPDDEVEDKPIRLGNWSPGNYTGKYLGPITLRQALAESVNTVAVRLVE
EVGPGRVIATARRLGITSDLRNDATLALGTSEVSLLELTTAYAALANGGYGVTSFGVSHI
TDPSGKVLYQRQGGGFGQVVSPAALSRMHDMMSAVVTQGSGKAARLDRPVAGKTGTTQDY
RDAWFMGFTADYVAGVWMGNDDYRIEMKKVTGGGLPAQLWKQVMTAAHRGLPARPLRTPE
VPAESSPAESVGDFVAGAAQAAGDAAKGIGGAIDDLLKGIFGR