Protein Info for AMB_RS02595 in Magnetospirillum magneticum AMB-1

Annotation: flagellar hook protein FlgE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 843 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR03506: flagellar hook-basal body protein" amino acids 6 to 302 (297 residues), 164.5 bits, see alignment E=2.9e-52 amino acids 595 to 823 (229 residues), 142.2 bits, see alignment E=1.7e-45 PF00460: Flg_bb_rod" amino acids 10 to 37 (28 residues), 28.9 bits, see alignment (E = 8.7e-11) PF06429: Flg_bbr_C" amino acids 764 to 841 (78 residues), 57.3 bits, see alignment E=1.4e-19

Best Hits

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 100% identity to mag:amb0504)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WA17 at UniProt or InterPro

Protein Sequence (843 amino acids)

>AMB_RS02595 flagellar hook protein FlgE (Magnetospirillum magneticum AMB-1)
MSLYGALFSGVSGLASQSSAMGAISDNITNVNTTGYKGAKVNFQTLVTKQVSLTTYSPGG
VQSKPRAAIDSQGLLQATTNSTDLALSGQGMFVVNTDPDPATSGNGMFAYTRAGSFKVDK
EGYLQNVSGFYVQGWPLQPTNNNVLAKPTELTVDGNTYMKAYKQADGTFHYVNQNIINPQ
ETKSLNLKTIGGTADQTTQIKMGANLPSGDTIYNPASTSSSGYHQTSVLIYDSLGDTHNF
NVNWTKTNSNQWDVETKSNFYSVASTLTDVKQNSTAALKIYGAAAGNTGNGITTLVTSAS
ATNMGYFAGTGVIAMPQFTLGNPLLTAQRALPTGSILNISGASGTASTNNGDWYVSSTVA
TSPTIVDTVATAAAIEIGGANKTYTAAAFAANLGGLGNAIDFTGDAAYSQTDYAVGDYIK
VSNSLSTTNNTGYYQVSSKTATALYLTPADYVTTSTAPYQDQRGVNPPSGAASMDIVDNS
TPSLVYASQGRVDFTASSSADVQALDTKSFTITIGGYDLNVYFDTTGTISPTVGKEVVIN
LNNTNLTSGSDVATLVAQALRNPKNWDENTNGGIAATKTVVALGGKLPLFRANGSTLEIV
QQQGGSTAKFSMANMGTTVTQSQTRNWSSGIPSVDTVNGEFYLNAITQVNPAITFNGDGT
PKTVNVGKMAVNWANGAQSMTLVPNGTGADQRINWFVGNTSQADGMTQLGGTYQLAYLTQ
NGAKFGNFSGVSVGTDGVVTALFDNGVRRPVFQIPVATFTNPNGLESLTGNSWIETNTSG
SYTLRQANNAGAGSVQSASLEASTVDIGSEFTTMIITQRAYSAAAKIITTADQMLDELVQ
IKR