Protein Info for AMB_RS02545 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 142 to 161 (20 residues), see Phobius details amino acids 238 to 262 (25 residues), see Phobius details PF00226: DnaJ" amino acids 11 to 71 (61 residues), 67.9 bits, see alignment E=6.8e-23 PF08239: SH3_3" amino acids 293 to 345 (53 residues), 29.3 bits, see alignment 7.9e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0494)

Predicted SEED Role

"Chaperone protein DnaJ" in subsystem Heat shock dnaK gene cluster extended or Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WA27 at UniProt or InterPro

Protein Sequence (499 amino acids)

>AMB_RS02545 hypothetical protein (Magnetospirillum magneticum AMB-1)
MNTIARDPKGYYAILGLAPGADAGAIKSAYRSRVKKVHPDRNTSKRAQEEFQRVIEAYGV
LKDVVRRAEYDTFGQESTHDDDAQVAGAPIACCDCGALTAQPRYVVYHWVRSYLVWAKTG
TVEGIFCRACADRAAVRASTITWALGWWSLPGLLLAPLVLLRNLLGGAKPRHENARVLIR
QGRAFLGRGELELARSLALQANRFASMPDDRARVEDLLHATREVSDNRRLKTRWRLGGGV
FLAQALPLLALPVTVGVFALIAAKPWDQPVATAAAPIAMQPARSGEIRHVAVDSLKVRMA
PLAGAPVLTLLDRFTTVEVSDAPGDPEWVKVRTPSGIDGFVETRSLYAGSGGRFKAQWCN
ENRGAQPGAGEILTRRVSGDHRLLVHNEGRRDGVVKLKTMAGNTVTTFYVPATYHIGIGG
IPEGTYRIEFATGSRYSRGCGIFLDEMQASVLPVTLTFKYQSAGTIRSLTNIAEISLYPA
SDDPIQPQPLSPDRFAADE