Protein Info for AMB_RS02250 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1443 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF20080: ALTTAQ_rpt" amino acids 300 to 337 (38 residues), 33 bits, see alignment (E = 3.8e-12) amino acids 527 to 561 (35 residues), 28.5 bits, see alignment (E = 1e-10) amino acids 796 to 833 (38 residues), 27.6 bits, see alignment (E = 1.8e-10) amino acids 877 to 913 (37 residues), 28.9 bits, see alignment (E = 7.2e-11) amino acids 940 to 977 (38 residues), 26.9 bits, see alignment (E = 3.1e-10)

Best Hits

KEGG orthology group: None (inferred from 42% identity to mag:amb0435)

Predicted SEED Role

"Large exoproteins involved in heme utilization or adhesion"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WA86 at UniProt or InterPro

Protein Sequence (1443 amino acids)

>AMB_RS02250 hypothetical protein (Magnetospirillum magneticum AMB-1)
MVSSISFLTATQISALSVTAVQSLSSTSLTALSATQVRAFTVTSIQALSSTQISQLGTAQ
TAALSTTQIQALATVQMSFSATQLAVLSAAQVDAFPAAEIAVLSPLQIRGLTVTEVGALN
TTQMGVLASTQLGALGVSQIRGLSTTQLNTVTTTQIAGLASTQFGALSTTQVSALSTTNL
AGLTTSQLVGLSSTGVAGLSTTQLTSLGTTQLSQLTVAQIGGLSTTQVSALDTTKLGALT
ATQIGGLTVTQVRALSTTVVADLTSTQMASLSAAQIVALTVTQVAAMETTDVAALTTTQV
AALERTDLGAITTTQLSGMSTTQLGALTATNVTGLSTTQIASMSTTQISGLASTQLASLT
PTQMGGLNSVGLAALSTTQINQLSMSALQALSTTQVNTLSTTQIAGLSVSQVALLSTTQL
SSVTSTQFAALTTTQTARLTQTQVTGLSTTEVAQLTTTQLGALSAAAIVGLTTAQLAAAS
TTQVGGLSVTQISSLTLTQIGGLSTSQLGEFSTTQLSRLSITQMRGLTTTDMGALSTTQL
AGLSATQMSSLTAGQLGALSSSTLPVLSTTQLGGLASAVLVGMNSTQLTALSSTQIGGLT
VTQLRGFSATQLGLFTTTQVAGLSTLQVAGLSTTQVNGLNTTTLDALSTTQLRSLSVLQV
AALSSSGLAGLTTTDLGSLTTTQMLGLETTDIAALASSQITALSTTQFAALAASQFSGLP
TATIAALSTTQVNALTVTQMAALTSTQAAILDTTGLAQLATTQISRLSPTVTAVLTTTQL
GGLTSTQLGSLAALSFAALSTTDLGTLSTTQISGIGAFQLAALTTNQAPGLSTTSLGLFT
TTQIGGLSLAGLGALSSTQLNTITTTQLTALSATQTARLTTTQISTLNTTGLAAFTTTQM
GALTTTQIGALSTTGLVELSTTQISSLKATAIATLATTKVAALTTTQVAGLTTTTIAAMS
VSGVGALTTTQVVQLSTTQLAAVPATAVRGLTTTELGALTTTQVGGLATSMLGSLSATQI
NGLTTTAVATLSTTQLGGLVAAQLSGLSTTLLNGLSSTGIASLSATQVKGLSTTNLGALS
TTQFSVLSTTQMASMTSTQVRALSTTTLAALTTTQVTGLSLGAVTALSTTQLTSIDSTGI
GALTTTGIAQLSSLSVGALTPTQLSGLSTTQLSKITTTSIMGLSTTALTSLSTTQFAGLT
AAQAATLSTTQIAGLTSAEIIALTTTQMAALNATSLTALTTTQVGVLSTTQVANISAAQA
RGLDSTDLSILSTTQLGSLTATALGSLYPTAAAGLTATSLSSLTTTQVSGLTASSLATFN
TTQLLGLSTTQVAGLTTVQVRGLTSTGIGGLSTTQVGAVSSTQLGSLTITQLAALGSTNV
AGLTTTQIDGLTATQVGSIATASVMALSTTQILSLSATQAGAFNATQVAAMSTTQIDSLV
SLF