Protein Info for AMB_RS01820 in Magnetospirillum magneticum AMB-1

Annotation: DUF3987 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 757 PF09250: Prim-Pol" amino acids 15 to 171 (157 residues), 42.9 bits, see alignment E=1.1e-14 PF08707: PriCT_2" amino acids 219 to 290 (72 residues), 61.5 bits, see alignment E=1.2e-20 PF13148: DUF3987" amino acids 429 to 670 (242 residues), 42.7 bits, see alignment E=6.6e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0358)

Predicted SEED Role

"FIG00779241: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAG3 at UniProt or InterPro

Protein Sequence (757 amino acids)

>AMB_RS01820 DUF3987 domain-containing protein (Magnetospirillum magneticum AMB-1)
MEAAQDFMARFGARLVDNGYPAIPIWPGTKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVE
TWATWPDAAIGLACGTLVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYR
ADVPFSGPKRAPLEILAQGRQFVAFAIHPDTGQSYVWPEDSPLTVALDDLPVVTEESVRQ
WLDAAIALLPDDLRPATLVSPSVSMPSTSPQRGTLAAVRSALAHIPNADLEYDSWVRIGM
AMKGAIGEDGASLFAAWSAMSAKDVPAATAKAWASFRPTTIGAGTLYHHAMERGWQPNLT
LVLDGSTSQDEVHPAAGLLAKLAAIPAEPTAPVQPFDLTIPDGVLGDMVTYMLATARRPQ
PELSLGASLCAIGALMGRKYRTESNLRSNLYVIALADSGSGKNHSREIINETFFQANLAQ
YLGGNKIASGAGLLTALHRQPAMLLQIDEFGMFLEGIADRKRSPRHLTEILDNMTELYTS
AGGVFLGAEYANRDGKNERRDINQPCLCVYGTTAPTRFWNALQSANVVDGSLARFIVIAS
GNQYPDENNDTGIRSAPPALIKSLKLIAAGAGRMAAGNLSGLTADPTTAVDPMTVPMDPQ
AKAIFRDLSRDITVRLREALGTPFTPILARIAENATRVALIRAVSFDPVRPVIRADDAEW
AIQFVSTCADRTMVEIGRRVADNDIERNHKRLLEIVRGAGATGLTKSELIRRSQFLDRRQ
RDEVIAVLVEAGIIEPIMTATVTKPTISFRTTGREAW