Protein Info for AMB_RS01710 in Magnetospirillum magneticum AMB-1

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 PF13579: Glyco_trans_4_4" amino acids 29 to 180 (152 residues), 64.1 bits, see alignment E=5.1e-21 PF13439: Glyco_transf_4" amino acids 29 to 185 (157 residues), 100.4 bits, see alignment E=3e-32 PF13477: Glyco_trans_4_2" amino acids 35 to 130 (96 residues), 34.7 bits, see alignment E=5.1e-12 PF00534: Glycos_transf_1" amino acids 200 to 362 (163 residues), 100.9 bits, see alignment E=1.5e-32 PF13692: Glyco_trans_1_4" amino acids 211 to 350 (140 residues), 92.1 bits, see alignment E=9.8e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0338)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAI3 at UniProt or InterPro

Protein Sequence (399 amino acids)

>AMB_RS01710 glycosyl transferase (Magnetospirillum magneticum AMB-1)
MDHVPPIEAPSATIRQPVVLQVLPALVTGGVERGTVDMAVALAEAGWKAMVASEGGPMVR
ELTRAGAEHITLPLASKNPLTIRANALKLADIIAANGVDIVHARSRAPAWSAWIAAQATG
AHYVTTFHGTYNLGWFGLKQKYNAVMTRGEKVIAISDFIAEHARRIYGLEAERVRVVHRG
IDMTRFDPTRVSPERIIQLAQKWRLPDGYQVIMLPGRLTRWKGQAVLIEALALLGRHDVR
CLLVGSDQGRTGYREELVELIKRRDLTDVVHLADECSDMPAAYMLTDVVVSASTDPEAFG
RVAVEGQAMGRPVIATAHGATNETVLPGRTGWLTAPGDPEALAQALDRFLALSGEERDLM
AKDAMDFVRAKFSKESMCASTLDVYREVLGLALAAPQAE