Protein Info for AMB_RS01600 in Magnetospirillum magneticum AMB-1

Annotation: class I SAM-dependent methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF01209: Ubie_methyltran" amino acids 39 to 156 (118 residues), 62.5 bits, see alignment E=1.6e-20 PF13489: Methyltransf_23" amino acids 42 to 190 (149 residues), 68.4 bits, see alignment E=2.5e-22 PF05175: MTS" amino acids 46 to 166 (121 residues), 29 bits, see alignment E=3.1e-10 PF05958: tRNA_U5-meth_tr" amino acids 48 to 104 (57 residues), 23.6 bits, see alignment E=9.8e-09 PF13847: Methyltransf_31" amino acids 48 to 166 (119 residues), 78.5 bits, see alignment E=1.9e-25 PF08242: Methyltransf_12" amino acids 49 to 142 (94 residues), 63.5 bits, see alignment E=1e-20 PF13649: Methyltransf_25" amino acids 49 to 141 (93 residues), 88.1 bits, see alignment E=2.1e-28 PF08241: Methyltransf_11" amino acids 49 to 145 (97 residues), 96.1 bits, see alignment E=6.5e-31

Best Hits

KEGG orthology group: None (inferred from 58% identity to bav:BAV3065)

Predicted SEED Role

"SAM-dependent methyltransferase YafE (UbiE paralog)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>AMB_RS01600 class I SAM-dependent methyltransferase (Magnetospirillum magneticum AMB-1)
MQRRSHDAVVSDQFSPQSQAYLASAVHARGEDLDQLAGIIGDRPEALALDLGCGGGHVSF
LLAPRVRKVVAYDLSEAMVETARAEAARRGLGNLDVRRGSAETLPCPDAAFDLVVTRHSA
HHWHDVATGLREARRVLKPGGLAVIMDVVTPGSALLDTWLQSLELLRDPSHVRNYSVEEW
RKMLAVAGFGPVTTSRFRLRLEFSSWIRRMNTPEVHVQAIRSLQGRAGAEIVRHFEMEAD
GSFTLDTMLMAAEG