Protein Info for AMB_RS01550 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 50 to 68 (19 residues), see Phobius details amino acids 74 to 91 (18 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 128 to 147 (20 residues), see Phobius details amino acids 154 to 175 (22 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details amino acids 266 to 284 (19 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0306)

Predicted SEED Role

"FIG00636320: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAL5 at UniProt or InterPro

Protein Sequence (332 amino acids)

>AMB_RS01550 hypothetical protein (Magnetospirillum magneticum AMB-1)
MYSDDDLDAASAAGILTPETATAFRDFVAGRQTAHEADEESVRLVTSFNDIFVTIAAILL
LSALGWLAGKAAPVLGGASVAVAAWTFAEYFTRKRRMALPSLALLLAFVWGVFSAGLSVV
GVDDFARGGYGVAAAAAIAALAAWAHWRRFMVPITIAAGAVTGAGALLALGLALVPALRD
YFLPLIFAAGLALFALALLWDAGDLARKTRRSDVAFWLHLAAAPMIVHPVFSLLGAGGAT
IAGAVGAVAIYAVLALVALAVDRRALLVSALAYVLYAATTLFEAAGSSTAAFALTALVIG
SVLLSLSAFWHHARRLVLAPLPAALRQRLPNA