Protein Info for AMB_RS01450 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 19 to 37 (19 residues), see Phobius details amino acids 57 to 83 (27 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 183 to 201 (19 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details PF07670: Gate" amino acids 20 to 111 (92 residues), 37.5 bits, see alignment E=1.4e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0286)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAN5 at UniProt or InterPro

Protein Sequence (306 amino acids)

>AMB_RS01450 hypothetical protein (Magnetospirillum magneticum AMB-1)
MNSLITIILPAGRSAIELSLFVLLPIMVVMLSMMRLLEAWGVLDWLVARLTPVLRPFGLT
GLATFAAIQVSFVSFAAPAATLAMMEQRGTSDRHLAAAFAMVLAMAQANAAFPLGALGLH
VLPVLGVSLVGGLLAAAIAYHVAGRTLSAEEQVLDETLKHAVAENAKGVVDVINRAGAEA
FRIAISAIPMLVVSLTVVTALRQAGAIQALTNALPFVDPDLVLPAVTKYLAGGTAMLGVV
DEQVRAGHLSPAQLNTWAGILIHPLDFPGVAVLMAAGPRTARVWKPAVLGSLAGIALRGA
LHMALN