Protein Info for AMB_RS01320 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 60 to 82 (23 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 117 to 137 (21 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 259 to 282 (24 residues), see Phobius details amino acids 298 to 318 (21 residues), see Phobius details amino acids 329 to 360 (32 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 416 to 434 (19 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 341 (312 residues), 139.9 bits, see alignment E=1.5e-44 amino acids 291 to 441 (151 residues), 47.7 bits, see alignment E=1.6e-16 PF00083: Sugar_tr" amino acids 34 to 273 (240 residues), 82.6 bits, see alignment E=4.2e-27 PF06779: MFS_4" amino acids 46 to 199 (154 residues), 41.1 bits, see alignment E=2.3e-14

Best Hits

Swiss-Prot: 52% identical to PCAK_PSEPU: 4-hydroxybenzoate transporter PcaK (pcaK) from Pseudomonas putida

KEGG orthology group: K08195, MFS transporter, AAHS family, 4-hydroxybenzoate transporter (inferred from 100% identity to mag:amb0260)

Predicted SEED Role

"4-hydroxybenzoate transporter" in subsystem Cinnamic Acid Degradation or Gentisare degradation or Phenylpropanoid compound degradation or Salicylate and gentisate catabolism or p-Hydroxybenzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAR1 at UniProt or InterPro

Protein Sequence (465 amino acids)

>AMB_RS01320 MFS transporter (Magnetospirillum magneticum AMB-1)
MTRDNQLNIQTFLNESRFSPYQWTVFALCFFVVLLDGFDTAAIGYIAPSLLKEWGIAKPA
LGPVLSAALFGLAAGALSAGPLADRFGRRLVLTGSTLLFALASLASSFAGSLDGLTVLRF
VTGIGLGAAMPNAVTLISEYCPDQRRSLLTNAMFAGFPLGAALGGFLAAWIIPQWGWRSV
LVLGGIAPLALVALMAVSLPESIRYMVARRQPAERIRKVLSRISASAAQAQGFVMTEAAA
KVAPTGKAGLGVVLSKSYLVGSVMMWLAYFMGLVIFYGLINWMPLLLKDAGLDPKSATLI
SALFPLGGVGAIFFGWLMDRANGNKVIAAGYVLTALLIFAIGQAVGNVGVLVLLVLVAGT
LMNTAQSSMPALAAGFYPTSGRATGVAWMLGMGRFGGIAGSTLVAELSRRQLGFSEMFTI
IAIPGLIAAAALLVKQMAHPETPAEHDAAVGEAHEHAQEAQLGGH