Protein Info for AMB_RS01160 in Magnetospirillum magneticum AMB-1

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 transmembrane" amino acids 275 to 296 (22 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 48 to 230 (183 residues), 27.6 bits, see alignment E=2.6e-10 PF00535: Glycos_transf_2" amino acids 51 to 212 (162 residues), 102.6 bits, see alignment E=2.4e-33

Best Hits

Swiss-Prot: 51% identical to Y501_SYNY3: Uncharacterized glycosyltransferase sll0501 (sll0501) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: None (inferred from 100% identity to mag:amb0228)

MetaCyc: 42% identical to undecaprenyl phosphate-N-acetyl-alpha-D-glucosamine transferase (Staphylococcus aureus)
2.4.2.-

Predicted SEED Role

No annotation

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAU3 at UniProt or InterPro

Protein Sequence (364 amino acids)

>AMB_RS01160 glycosyltransferase (Magnetospirillum magneticum AMB-1)
MDQRSGQVCRDKNARKAALPQSAGSAMLGNRSIGTVPMTAAVNQNSAPTLSVVIPCYNEG
ENVPLLFARLLPALEGLGVSFEVICINDGSRDDTLDRLLDLQKGESRLRVIDLSRNFGKE
KALSAGLFHSRGQAVVPMDADLQHPPEAIAHMLAKWRDGYEVVFARRDARTGQGLSEKIF
AKGFYWVFDHLSDVRLPREVGDFRLMDRKVVDTINQMPERSRFMKGIFAWVGYRQAEIIY
HQGERAAGTTKFNSLKLLGFAFDGLTSFSNFPLRVWGWVGAMVSSLAFLYIVFRLIRTMI
WGIDVPGYESTLMSVLFLGGIQLLTLGIIGDYLGRVFDEVKGRPLFIVRQLYEPAGKDDG
TTSP