Protein Info for AMB_RS00890 in Magnetospirillum magneticum AMB-1

Annotation: benzoyl-CoA 2,3-epoxidase subunit BoxB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 473 TIGR03225: benzoyl-CoA oxygenase, B subunit" amino acids 4 to 472 (469 residues), 930.3 bits, see alignment E=1.1e-284

Best Hits

Swiss-Prot: 68% identical to BOXB_AZOEV: Benzoyl-CoA oxygenase component B (boxB) from Azoarcus evansii

KEGG orthology group: None (inferred from 100% identity to mag:amb0175)

MetaCyc: 68% identical to benzoyl-CoA oxygenase component B (Aromatoleum evansii)
RXN-2401 [EC: 1.14.13.208]

Predicted SEED Role

"Benzoyl-CoA oxygenase component B" in subsystem Benzoate transport and degradation cluster

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.14.13.208

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WAZ6 at UniProt or InterPro

Protein Sequence (473 amino acids)

>AMB_RS00890 benzoyl-CoA 2,3-epoxidase subunit BoxB (Magnetospirillum magneticum AMB-1)
MSSINYAEKIPNNVNLSEDRKLQRALESWQPHYIDWWKEMGPEGTSTSEIYLRTAISAEP
DGWAQFGHVKMEDYRWGIFLAPPEKDRKVNFGAHKGEDAWQEVPGEYRSMLRRLITVQGD
TEPASVEQQRLLGKCCPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGKDGREEAEEMLA
RRSGDADKPRILGAFNEKTADWLAFFMFTFITDRDGKYQLCALAESGFDPLSRSCRFMLT
EEAHHMFVGESGVGRIIERACQVMKENRTEDVRKFGVIDLPTIQRYLNFHYSVTSDLYGA
EVSTNAATSYNMGLKGRYEETKIGDDHQLEHTTYSVLHPVNGGFQAVEVPALNALNERLR
LDWAEDVAKGVERWNKIIAKHGIDFKLTLPHLAFNRAIGHFSDIAVDPSGKVISTEEFAR
RRDEWLPSESDLAYVLSLMGGAVTQPGKFANWIAPPARGINNQPVDFDYVRFA