Protein Info for AMB_RS00720 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 59 (24 residues), see Phobius details amino acids 115 to 139 (25 residues), see Phobius details amino acids 151 to 185 (35 residues), see Phobius details amino acids 197 to 227 (31 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details amino acids 297 to 315 (19 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 356 to 376 (21 residues), see Phobius details amino acids 396 to 419 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0143)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WB28 at UniProt or InterPro

Protein Sequence (732 amino acids)

>AMB_RS00720 hypothetical protein (Magnetospirillum magneticum AMB-1)
MKSELPIILAVILSLVAIYGLRPSRAGSGWLSSSKIFPVVWVLIFLLPYMAFGPSSYLWM
DDEGDLLVPFHYYVANFADGGQYSHLLGAGADLKGSFLIGGELISPERFLMAHFPLWIAI
AVHKALTCVFGFAGNYLLARRLGGLDRRPSLALAAFGTVFWFRMILVTYSTGMTLSLIPI
GVYLLVGRLGRRWWWGGALAYAVMAGLWMVPTEGAPAISIAVVATMILTKRYDWRPFAGI
ALAGIVIGVNWSESIYAMLQTMGESMRGSDQSSVSTEALDVIHGTIVGYLSMFTNTAWPL
GLEIALSLAFLAIAAPRQVPRALITMILPVFFIAGFLLFPWTEIGLAGIRNSGTRYFTFG
VTGTVTLVAAQAIIAWKRRGYGLVPWVIGRGESLPAALALVGAFAILGWNVGFQMINLFY
RSGQAHYHVSNLKNPTWFNASDPARVVSLRASYLQPEPGVVLAYNLPYFDAWLNLMDPRF
FRYWVNGVNPRDPTDPRIGYDWASVRGGVVHVEEMVSLPLLAAANVGYLVSALPVTGQGL
VLLDGPDRPQLEKPSRSGVSPMEYYRDRWSRIFDLGKMHIYALPGRLPRVWAAAALQTTS
SAAGSAGFLAEVAAAAPARVAVLNAAHAMALGKAEAHASMTVGRFDLVRNGFEVDLDAPE
GGVLMVNALATRHFRAWADGRELPFTEANGVQTAIAVPAGSRHVSLCYGRRPLVATTAKD
PRECGLAAARSP