Protein Info for AMB_RS00490 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 723 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 44 to 62 (19 residues), see Phobius details amino acids 82 to 100 (19 residues), see Phobius details amino acids 120 to 144 (25 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 176 to 198 (23 residues), see Phobius details amino acids 210 to 242 (33 residues), see Phobius details amino acids 250 to 272 (23 residues), see Phobius details amino acids 304 to 322 (19 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details PF19510: DUF6044" amino acids 41 to 338 (298 residues), 29.7 bits, see alignment E=1.2e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0097)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WB74 at UniProt or InterPro

Protein Sequence (723 amino acids)

>AMB_RS00490 hypothetical protein (Magnetospirillum magneticum AMB-1)
MFFDFIKQDELQGLARLAPFIIFIVLAVMLSVKKVGYRNVKTRNIITISILAIMGMAAEY
VLPGNSSFINFVDEGDVFVPIYLYFEGLFAGGSFAQAVAGGNDAIGMLASGGQFFSLEML
LIKVFPLWAAIAIHKVSVFGISLLGSWLLLHRGMGLAPILAVGFGVWYGLSSFDLYMYSL
QHGISMAAIPLSIYLMVVRADKGDQYYRWIIPLAALLSTSTLLTHSMMALMFSLMVATIM
LGLGNWRRKVAAITILFVFVCLNWADVITSFTQLSQGASRQPHLFSFHSLLSFNFWRTSQ
GEKLVFFYISLIISLAICVIYARRDGLRYLSGLVFCLLANPIIMLIPWERLGLGFVLGID
FGRLTYGFAALGLIPMARASLIVAERWKSPLAQGAPLAVCLSLAIGALLFQKASTIVQYL
GEGGQAVLTKVPNLRDRPWQTDPHGRVVTIPHLIVPFAPLAYGLETFDGYLNLQPMIKAR
FWSYAKKHLPIYSGRNTFIENQLYLNRPMAFDMRCCDRFSLDDMIDQDFLRLGGVRYVVS
YVPLGGNGLRQISGPHAYVARHKKPFRQKIEEDLRQIASPGEVFVYETTNSQPIAFFASS
VTALSAEASDEEVYQAAIAGVASRKVAVQLPVAPLPQATGQVAALDYVPGGYVAKVIAPE
GGLFVLNVPKTRFWTVSIDGRPAEVFAVNGIQMGVEIYPGAREIRFEYRRPRVADLLRRL
IHR