Protein Info for AMB_RS00380 in Magnetospirillum magneticum AMB-1

Annotation: DegT/DnrJ/EryC1/StrS family aminotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF01041: DegT_DnrJ_EryC1" amino acids 30 to 370 (341 residues), 317.3 bits, see alignment E=1.6e-98 PF00155: Aminotran_1_2" amino acids 53 to 173 (121 residues), 34.1 bits, see alignment E=1.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0075)

Predicted SEED Role

"Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WB96 at UniProt or InterPro

Protein Sequence (376 amino acids)

>AMB_RS00380 DegT/DnrJ/EryC1/StrS family aminotransferase (Magnetospirillum magneticum AMB-1)
MQIKCCMREMTNMTPPTVPYLDLRVTDDAEREDLLAAVDRVLRHGRIVLGPEVAEFEARI
AARVGRRFAVGVNSGTDALILALRALGIGAGDEVIVPALSFVASANIVKLAGAVPVFADL
GPDMNMDPAVIEGLITPATRAILPVHFAGKICRMEEICAIAERHRLLVIEDAAQAFDAVR
HGRKAGSFGQVGCFSMNCMKVLASLGEAGVIVTDDDALHDHLVQLRYHGLVTKESCGFLS
HNGRLDTVHAAMLSVRLDRFDEVMRRRRDNAAYYSARLGHLVDVPRDDADCQDAYYIYVI
ATDRRDALQDFLTARGIETKQPHILMPEHPVHKDARGFWDNAARVHHRRLSLPISEKLTD
TQRTYVADAIVEFFNI