Protein Info for AMB_RS00200 in Magnetospirillum magneticum AMB-1

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 53 to 92 (40 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 131 to 152 (22 residues), see Phobius details amino acids 158 to 201 (44 residues), see Phobius details amino acids 207 to 229 (23 residues), see Phobius details amino acids 233 to 253 (21 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details PF00953: Glycos_transf_4" amino acids 79 to 226 (148 residues), 107.8 bits, see alignment E=2.8e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0039)

Predicted SEED Role

"Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-)" in subsystem Methicillin resistance in Staphylococci or Teichoic and lipoteichoic acids biosynthesis (EC 2.7.8.-)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.8.-

Use Curated BLAST to search for 2.7.8.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WBD2 at UniProt or InterPro

Protein Sequence (333 amino acids)

>AMB_RS00200 glycosyl transferase (Magnetospirillum magneticum AMB-1)
MAESGQAALWAALTTFAASLGATRAVLAWLRHRQILDHPNERSSHSLPTPRGGGLAVTPV
TVAALILAAFAVGGQPTFLAAGALVLMAISWVDDRKGLAPLPRFLTQAAIVAASLIGLGP
DALAFKGVLPLWADRLLIGLGWLWFVNLYNFMDGIDGITGVESVAIGLGLAAVAALAGLG
GLLPPALIIAAAALGFLVWNWHPARIFLGDSGSIPLGFLLGGLLVQLAVSGQLAAALILP
AYYLADATITLLWRLKDGERVWQAHRRHFYQRAVRGGQSHARVSLLILGGNVVLAGAALL
AALGHTVPAVMLALLAVAGVLGQMTRWAGGIRR