Protein Info for AMB_RS00180 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF02543: Carbam_trans_N" amino acids 2 to 347 (346 residues), 376.4 bits, see alignment E=1.7e-116 PF16861: Carbam_trans_C" amino acids 405 to 594 (190 residues), 244.2 bits, see alignment E=5.7e-77

Best Hits

KEGG orthology group: K00612, carbamoyltransferase [EC: 2.1.3.-] (inferred from 100% identity to mag:amb0035)

Predicted SEED Role

"Nodulation protein nolO (EC 2.1.3.-)" (EC 2.1.3.-)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.1.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WBD6 at UniProt or InterPro

Protein Sequence (612 amino acids)

>AMB_RS00180 hypothetical protein (Magnetospirillum magneticum AMB-1)
MRILGLSALYHDSAAALVEDGRIVACAQEERFTRKKHDAAFPENAIAYCLAEAGIGLAEV
DFVVFYDKPFLKFERLLETYVAFAPKGFSSFKTAMPVWLKEKLFQKDLLAREFKRFAPGF
DWMNKLLFAEHHLSHAASAFFPSPFEDAAVLTMDGVGEWTTTSLAMGSGNRLEIHKELHF
PHSLGLLYSAFTYYTGFKVNSGEYKLMGLAPYGEPKYTSLILDNLIDLKEDGSFRLDQSY
FDYCTGLHMTNQRFSALFGQPVRKADKDPLTQFHMDIAASIQEVTEIVVSKLCHGIKKET
GARNLCLAGGVALNCVSNGKVLREGIFDNIWIQPAAGDAGGALGAALAGYHVFKSQPRSV
TPGKDAMKGSYLGPVFGQADIEARLTAAGAKFTVMAEAEVTEATAQALAEEKAVGWMQGR
MEFGPRALGGRSILGDPRSPTMQKLLNLKVKYRESFRPFAPSVLREDVADWFDLDGDSPY
MLLVAPVAEKHRRAMTEDENKLFGIDKLNVPRSAIPAVTHVDYSARVQTVHADTNPRYHA
LISAFKARTGCGVVVNTSFNVRGEPIVCGPEDAFRCFMGSEIEVLVVGNCFLRKEEQDPA
LKLDYKNAFELD