Protein Info for ABZR88_RS21490 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 903 PF13185: GAF_2" amino acids 185 to 283 (99 residues), 30.7 bits, see alignment E=1.7e-10 PF01590: GAF" amino acids 189 to 282 (94 residues), 25.2 bits, see alignment E=1.1e-08 PF13492: GAF_3" amino acids 192 to 284 (93 residues), 32.9 bits, see alignment E=4e-11 PF08447: PAS_3" amino acids 322 to 404 (83 residues), 29.6 bits, see alignment E=3.4e-10 amino acids 446 to 530 (85 residues), 56.1 bits, see alignment E=1.8e-18 TIGR00229: PAS domain S-box protein" amino acids 419 to 543 (125 residues), 49.4 bits, see alignment E=2.4e-17 PF00989: PAS" amino acids 424 to 534 (111 residues), 24.3 bits, see alignment E=1.3e-08 PF08448: PAS_4" amino acids 432 to 538 (107 residues), 41.5 bits, see alignment E=7.1e-14 PF13426: PAS_9" amino acids 435 to 536 (102 residues), 34.2 bits, see alignment E=1.3e-11 PF00512: HisKA" amino acids 544 to 608 (65 residues), 57.9 bits, see alignment 4.3e-19 PF02518: HATPase_c" amino acids 650 to 760 (111 residues), 95.9 bits, see alignment E=1.1e-30

Best Hits

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (903 amino acids)

>ABZR88_RS21490 ATP-binding protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MAVNYAFPMLNHQNFRQVYDQSAGSVIALDGQGVIVYANPAAVRDLFMDLDYAGRPARDF
FSGPDKEVLQEEEFTLEKEGEPVFVLVSSANFTDTNGLTLTYWMIRDISALKKKEYLLAY
LNTATEELSRARDTKGALAKISQLIVPKFATWFSIDLIHDGRLEELVLAHEDPGMIRWAR
TYREAYPTDLKSDSGAARVVKTGEPSFVPQVTEAMVRGSIKDPDQLEAILRLNLQSVITV
AIYHKETITGLISFVSSVTGQYYDEADLRFAQNLANHIGLALENARLNEQLEHTRVQLES
ALSSGLVGTWTYDMENDRFYPDQNLARMFGMPYEPGGCSRAAYMDLLHPDDAPLINAQRQ
HPVVQGGQYETEYRVIVNGAVRWFFARGQTRPGADGHLPVFTGVIVDVTERKAAELALKE
SGELFRFLADAIPHKIWTANPQGQATYYNQGWYEYTGIRDFEELREKVWDILHPDDRPVA
EAEWPKAMASGQGMQMESRFRRHDGTYRWHLSRFSAHRDAEGHIQLWVGTSTDIHEQKEN
EQRKDEFLSIASHELKTPLTSIKAFNQLMKRTRDEARLAGFIDKSADHIYRLERLINDLL
DVTKINAGKVVYTAETFVFSALLRESIDNMQYNASHEIILESAADVPFTGDRLRLERVIN
NFLTNAAKYSPDGSRILVNNFVEGDSLVVSVQDFGIGIAPENLDKLFDRYYRVDNTAMRF
DGLGLGLFISAEILRRHQGSFWIESEPGKGSTFYFRLPLPADNTPVIQKSTAYLDSKITI
NCLPAEHTLEVDWSGFQDLASVQRGCLLMLDYLSRNHCDRVVNDNTHVQGNWSEAVEWVG
NEWFPMMEKAGLKYFAHVFSPSTFSQLAAKKSIDIMAGIVTTQYFTDLELARGWIARQPR
DPA