Protein Info for ABZR88_RS20215 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF13181: TPR_8" amino acids 30 to 63 (34 residues), 12.9 bits, see alignment 6.3e-05 amino acids 65 to 96 (32 residues), 20.3 bits, see alignment 2.6e-07 amino acids 98 to 131 (34 residues), 31.8 bits, see alignment 5.5e-11 PF13432: TPR_16" amino acids 35 to 98 (64 residues), 36.3 bits, see alignment E=4.1e-12 amino acids 103 to 165 (63 residues), 25.6 bits, see alignment E=8.7e-09 PF13414: TPR_11" amino acids 37 to 78 (42 residues), 37 bits, see alignment 1.3e-12 PF14559: TPR_19" amino acids 41 to 104 (64 residues), 46.1 bits, see alignment E=3e-15 PF12895: ANAPC3" amino acids 42 to 123 (82 residues), 28.8 bits, see alignment E=7.4e-10 PF13424: TPR_12" amino acids 65 to 127 (63 residues), 31 bits, see alignment E=1.4e-10 PF13174: TPR_6" amino acids 66 to 97 (32 residues), 13.7 bits, see alignment 5.1e-05 amino acids 100 to 123 (24 residues), 12.8 bits, see alignment (E = 9.9e-05) PF13431: TPR_17" amino acids 87 to 119 (33 residues), 26 bits, see alignment 4.2e-09 PF13176: TPR_7" amino acids 100 to 127 (28 residues), 15.7 bits, see alignment (E = 8e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>ABZR88_RS20215 tetratricopeptide repeat protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKNLNLKTTLLVAFICICMAAPTLAQSTDAKALVKQGTELHDQGKYNEALAKYTEAMKAD
PNYPTAYYEYAYTLFTTGKGKDAITYLEKLLKLDPKSANAYDMLGSIYDDMGQQDQAIEY
YKKGVAANPDYQRLHFNLSITYYRKQLYSQSAQEALAAIKLDPKHASSHRIYGMAAYALN
QRGAALLAFCNFLLLEPQSKRSLEIVNNVKKIINYGIKRKDAKNVTLSVSPDDMGNLMMS
MSVLAATDKKGELSAVDSLQYQLTSLFNVANTIAGGDKADPFVVKYYGDYFKALAETDNM
PAFTRFISVSLYPTENMQWLKDHDKELTAFDIWTRSTLHKF