Protein Info for ABZR88_RS20030 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: ribosome-binding factor A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 123 PF02033: RBFA" amino acids 5 to 110 (106 residues), 85.5 bits, see alignment E=1.4e-28

Best Hits

Swiss-Prot: 40% identical to RBFA_CYTH3: Ribosome-binding factor A (rbfA) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)

KEGG orthology group: K02834, ribosome-binding factor A (inferred from 70% identity to shg:Sph21_1160)

Predicted SEED Role

"Ribosome-binding factor A" in subsystem NusA-TFII Cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (123 amino acids)

>ABZR88_RS20030 ribosome-binding factor A (Mucilaginibacter yixingensis YX-36 DSM 26809)
MESKRQQKFAGVIQEDLAAIFQREGMSFLPNTLVTITKVRVTPDLALARVFLSFFNSPNP
QLAVQTIKTHSSEIRYKLGARIKDQVRVIPQLEFFLDDTNEYVERMDKIFERISHEDRQK
DEE