Protein Info for ABZR88_RS19930 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: sodium/sugar symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 40 to 63 (24 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details amino acids 123 to 147 (25 residues), see Phobius details amino acids 156 to 176 (21 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details amino acids 284 to 309 (26 residues), see Phobius details amino acids 345 to 371 (27 residues), see Phobius details amino acids 393 to 415 (23 residues), see Phobius details amino acids 427 to 445 (19 residues), see Phobius details amino acids 452 to 471 (20 residues), see Phobius details amino acids 500 to 518 (19 residues), see Phobius details amino acids 543 to 562 (20 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 40 to 460 (421 residues), 295.9 bits, see alignment E=2.6e-92 PF00474: SSF" amino acids 40 to 460 (421 residues), 176.2 bits, see alignment E=5.1e-56

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 70% identity to phe:Phep_2204)

Predicted SEED Role

"putative sodium/hexose cotransport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (563 amino acids)

>ABZR88_RS19930 sodium/sugar symporter (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKTLASGDWLVFLLYFIIVSLYGFWVYRSKRNADATSKDYFLAEGSLTWWAIGASLIASN
ISAEQMIGMSGSGFKMGLAISTYEWMGGFTLIVVAIFFIPVYLRNKIFTMPQFLHERYNG
TVAMVMAIFWLALYIVVNLMSILYLGALALHGISGYDLNLCIGFLAVFAVIITLGGMKVI
GYTDVIQVFVLILGGLVATYLALTLLSEKEGTHGLLNGFNIMLKEAPEHFHMIFHKDNAN
YLDLPGLSVLIGGMWIVNLNYWGCNQYITQRALGANMKTARGGLLFAAFLKMLMPVIVVL
PGIATYVLYQKGMFHTEMLSSKGVQDVNKAYPALLNLLPTYMKGLSFAALTAAIVASLAG
KANSIATIFTLDIYKKAINPEASDKKLVNLGKMTVVVAMALGVIMSLIIGDALMGEGKQG
FQYIQEYTGFVSPGILAMFLLGFFWKKATSRAALFATIGGFGFSVLFKFLPNMMNLQFLS
PFGFSKLNGEGVYEIPFLDRMGFVFILCVAGMWLISTLEGGNKNADDPHGLVVDTSMFKT
SRAFTAGALIVGLILVALYSIFW