Protein Info for ABZR88_RS19530 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: biosynthetic peptidoglycan transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 729 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details PF00912: Transgly" amino acids 431 to 578 (148 residues), 146 bits, see alignment E=4e-47

Best Hits

KEGG orthology group: None (inferred from 49% identity to phe:Phep_0045)

Predicted SEED Role

"Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-)" in subsystem Peptidoglycan Biosynthesis (EC 2.4.2.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.4.2.-

Use Curated BLAST to search for 2.4.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (729 amino acids)

>ABZR88_RS19530 biosynthetic peptidoglycan transglycosylase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MHRLSSKHIRIGLIIISALLMVFIIGGFVAYSKREVLLQEVISKAKAKAKSEYNLDVKIE
NPRFTGLSTVAFSGITVVPHDRDTLLVIRNFEVGVKLMPLIIGQVKLSEVHLDDAKLTLT
DLKGIKNFDFLFHKKKDSTSTDKKGDLSTLAHNLVNQILYKIPDDLDMKRFNISFTNDSN
HVTILSSAQIRDGELKSNIKVNNSDTLWHFAGRMHPSDRDIDISLFADKGKITMPYVQSR
YHATVSFDTLTTRLNKVERSNGETQIYSTLAVRNLLINQAALAANDIVVPQGSIDANIFV
GPNYVSIDSSSTIHLKRLTAHPFIKYTLKPVKIYELKINTGWLPAQDIFDSFPQGTFESL
QGIKVAGKLNYKLNFKLDTSNPKDVEFDSRLDKDDFKILQYGKTNLGMLNGSFTHVSYVK
NKAMPPRIIGPENPDYTPLHDISPELRNAVMTAEDPTFYNNNGFVEEAFRKSIATDYIRH
KFSRGGSTISMQLVKNAFLVQEKTVFRKIEEMMIVWVLVNNHIMTKDRMLEVYFNMIEWG
NNVYGIGEAARYYFGKTPDQLNLGESIYLASIVPRPRAGLYAFMPDGSLNPRLTYYFNAL
GNLMVGHGLTVHRDSSFYGFYNVRLKESLRRQLHPSDSSDIASLMKADDDDAGVQNIPVA
PPTAGPQQEEKKPGFFQRLFGKKDTTRKEDEPKIDTAGKTKKQIRQEKREQKRLDKQRRK
EMEERGINP