Protein Info for ABZR88_RS19065 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: 1-hydroxycarotenoid 3,4-desaturase CrtD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR02734: phytoene desaturase" amino acids 6 to 487 (482 residues), 367.7 bits, see alignment E=4.6e-114 PF13450: NAD_binding_8" amino acids 8 to 71 (64 residues), 50.3 bits, see alignment E=4.6e-17 PF01593: Amino_oxidase" amino acids 13 to 487 (475 residues), 98.7 bits, see alignment E=9.7e-32

Best Hits

KEGG orthology group: None (inferred from 55% identity to hhy:Halhy_4788)

Predicted SEED Role

"Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) / 4,4'-diapolycopene oxidase" in subsystem Carotenoids (EC 1.3.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.-.-

Use Curated BLAST to search for 1.3.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (489 amino acids)

>ABZR88_RS19065 1-hydroxycarotenoid 3,4-desaturase CrtD (Mucilaginibacter yixingensis YX-36 DSM 26809)
MAQKSAVVIGAGVAGIAVAIRLAVKGYAVHVFEANNYPGGKLSEFTKDGFRFDAGPSLFT
MPQYVDELFRLAGKNPQDYFSYQKLDTVCHYFYPDGTRIKSTSDADLLAAEIQTQTGEPA
GHVSQYLQNSKRIYGITNHVFLEQSLHRLRTYLSFKTLKSVLQLFQIDAMRTMHRANQSF
FRDKRLVQYFDRYATYNGSNPYQAPATLNVIPHLEQHLGAYFPEGGMYSITQKLVELATS
LSVKINYNAPVEEILLRDNRATGIKVNGEVIEANIVVSNMDVYPTYKKLLGKRPDLHPQK
TLRQERSSSALIFYWGILSRFDDLHLHNIFFSGDYKAEFNAIWKEQTISNDPTVYINISS
KLQPGDAPDGCENWFVMINVPANNGQDWDALVNTSRRNVIKKLSSMLGTDIAPLIVSESV
LDPRNIEQRTSSYKGSIYGSSSNSQLAAFLRHANRQSKVKNLYFCGGSVHPGGGIPLALL
SAKIVADWV