Protein Info for ABZR88_RS18670 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: excinuclease ABC subunit UvrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 948 TIGR00630: excinuclease ABC subunit A" amino acids 15 to 930 (916 residues), 1325 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 142 to 248 (107 residues), 106.4 bits, see alignment E=2.2e-34 PF17755: UvrA_DNA-bind" amino acids 298 to 396 (99 residues), 83.3 bits, see alignment E=4.5e-27

Best Hits

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (948 amino acids)

>ABZR88_RS18670 excinuclease ABC subunit UvrA (Mucilaginibacter yixingensis YX-36 DSM 26809)
MSSTKHVDLGEQSEVEVYGARVHNLKNIDVSFPRNQLVVITGLSGSGKSSLAFDTIYAEG
QRRYMETFSAYSRQFMGGMERPDVDKVSGLSPVIAIEQKTTSKNPRSTVGTITEIYDFMR
LLYARAGEAYSYVTGEKMERMSEDQIMRALLEKFDGQPVNILAPVVKGRKGHYRELFEQI
RKQGYLKVWLDGAIEDITPKMQVDRYKIHDIDVVIDRLVVSKDDTKRLYSSVQNALKMAK
GIIRIADKDNNVSYYSKYLMDPVSGISYDEPQPNTFSFNSPYGACEKCGGLGYIFEVDEA
SVIPNPKLSIVNGGLAPLGEYRDTWVFQVLKALGKKYEFSLSTPIEKLPKEVMEIILNGS
TEIITVAVEYNKWNVQNYQITFDGIIKMLEEQQERRGEEGMDDMENYRVLRTCPTCHGAR
LKKESLNFKIDGKNIFELACMDINKLHEWFDGIEDRLNERQNVIAKEILKEIRARIVFLL
DVGLSYLTLDRTARTLSGGEAQRIRLATQIGSQLMNVMYILDEPSIGLHQRDNDRLIKAL
KNLRDLGNTVLVVEHDKDMILEADHVIDMGPAAGVHGGTVVAEGTPQQLMSAHTLTTSYL
NGEREIAVPEKRREGNGKSLHLKNATGHNLKKVSVDFPLGKLIGVTGVSGSGKSSLITNT
LYPILNHHFFRAKKTPLPYGSIEGLEHIDKVIEIDQTPIGRTPRSNPATYTGVFSDIRNL
FVALPESKIRGYKPGRFSFNVKGGRCETCQGAGMKVIEMNFLPDVQVPCEECGGRRYNRE
TLEVRYRGKSISDVLDMSIEDATPFFEHIPPIYRKVKTLLDVGLGYITLGQASTTLSGGE
AQRVKLATELSKKDTGNTFYILDEPTTGLHFEDINVLLGVLQILVDKGNTVLVIEHNLDV
IKVVDHVIDLGPEGGSGGGKILYSGTPEGLCKVKASFTGQFLKKEMGL