Protein Info for ABZR88_RS18580 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 705 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details

Best Hits

Predicted SEED Role

"Polygalacturonase (EC 3.2.1.15)" in subsystem D-Galacturonate and D-Glucuronate Utilization (EC 3.2.1.15)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.15

Use Curated BLAST to search for 3.2.1.15

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (705 amino acids)

>ABZR88_RS18580 hypothetical protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MLFSHKIKLLAAFGLLAGTTSLTFAQRIDRYALVSRHNVTLKEADPLAPLSVGNGDFAYT
ADVTGMQSLEGYYYKNGIPLETMCTWAWHSFPNTKNLRLEDAMKPIDFHGRQIMYASQEK
SEAGDYYRQNPHPVPLGQISLMEDGKALDVANVKNVDQTLDLWRGLINSKYELDGQPVSV
QTVSHPERSMVAFSIKSALLKSGKLTPAFRFPYAYDLSIKNKPPFDWSKPDRHQTTIVSQ
TPNSVLLKRSIEGTVYYVSIHWQGKARLVNDGKHYYHLDAAGSDSLQLVCEFMPSVNKAP
EPTFATVKAADIKGWADYWQKGGVADFSGSKDPRANELERRIVLSQYLLKINYAGSFPPQ
ETGLTHISWYGKHNSEVYWWHTAQFYEWGHTDLLEKSFNWYKKILPKAIAEAKREGFDGA
RWPKMAGIDGRTSPGSINPFIIWNQPNPIYLAELIYRANPTTATLKQYSDVVFESAKFLA
SYAFFDAKTNRYVLGPPIKAVNEHTEENATQNPTFELVQWYYGLKVAQDWRVRMGLPRDA
KWDDILQKLSRPTVSNGKYLEIETEPSGGGSDMIMALGYMPQTPMIDPKIMANTFDNIYQ
RGSMRSFISWSLGKGALTAARLGEQEKAVNILCNDTFGAHFLKNGHVQRAKEPLTCPAYL
PANSAFMAAAGLMVAGWDGGPKENAPGFPQDGSWHVRSEGLNKLP