Protein Info for ABZR88_RS17235 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 28 to 49 (22 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 120 to 145 (26 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details amino acids 190 to 213 (24 residues), see Phobius details amino acids 246 to 269 (24 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details amino acids 311 to 333 (23 residues), see Phobius details amino acids 338 to 355 (18 residues), see Phobius details amino acids 393 to 416 (24 residues), see Phobius details PF05977: MFS_3" amino acids 14 to 418 (405 residues), 102.6 bits, see alignment E=1.9e-33 PF07690: MFS_1" amino acids 29 to 379 (351 residues), 96.8 bits, see alignment E=1.3e-31

Best Hits

Predicted SEED Role

"putative transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>ABZR88_RS17235 MFS transporter (Mucilaginibacter yixingensis YX-36 DSM 26809)
MSGEGDSTPQQEDRFAPLRYKDFRSYLGMRFFFTFAYMMQTTVLGFYIYEITHSKVALAF
VGLGEAIPAVGIALYGGYIADKYEKRKMLLLIFGGVFFCALVMFTATLSSVHAYIKTGWV
LPILYAMIFGNGVARAFYGPATFTVYAQSIPKELYPKASTLSSSSFQIAAILGPATAMFV
YAYAPHISSGLTGITATFGIIQVFLLIALVLIYRLRKYPPVFVPKEDIWTSLKEGLHFVF
NNKMMFYAMTLDLFSVFFGGVVALLPVFALDILKVGPEGAGIMRTAMSLGAAITMIAMVR
FSPMNHPWRNLLIAVTGFGLAIIGFGLSRIFYLSVFCMFMQGAFDSVSVIIRSTLMQLLT
PDHMRGRVSSVNQMFIGSSNEIGDFESGMAAKYLGTVPAVLFGGCMTIFIVSFTFFKTKN
LLPLGLNDIHQADADGTMEVKSEAKTA