Protein Info for ABZR88_RS16890 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: LptF/LptG family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 53 to 79 (27 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 369 to 389 (21 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 426 to 446 (21 residues), see Phobius details PF03739: LptF_LptG" amino acids 8 to 447 (440 residues), 242.1 bits, see alignment E=4.4e-76

Best Hits

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (478 amino acids)

>ABZR88_RS16890 LptF/LptG family permease (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKKIHLLLLRAFIRPFVVTFLIVMFVLLMLFLFKYIDDLIGKGFEWYTILQLMLYASATN
VAMALPLSVLLSSIMTYGALGENYELVAIKSAGISLSRALYPMVIVVFFLSVAAFFFSEY
MLPVANLKYYSLLYDARKQKASFLISEGIFNNSIPGYSIRVKHKDKDGATLHDLMIYSRA
SLQDNNMAVTFAKEGVMFRAGDNLIIRLRDGVRYEESAGRNNASDQRQTLQRIRFKERIQ
KFDLSSFNLQRTNEDEFRGAFQMMNLKQLNGFRDSSNKLVNLGLERNFSLITPYMKYFQF
PHKSKTVKKYLPGDLNYIKKQPRDAQLVAMNNALNEAKSVGEQVKLRATRFEELNHEVRR
SRVEYEKKFTLSAACIALFLIGAPLGAIIRKGGLGLPVVVSIIFFLIYYIISTIGEKSVK
DGDWTPLFGMWMPIGVLTPIGLFLSYKAANDSVLFDIELYKRFFKNLGSIFKRKELPQ