Protein Info for ABZR88_RS14995 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: cell wall metabolism sensor histidine kinase WalK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 transmembrane" amino acids 7 to 32 (26 residues), see Phobius details amino acids 152 to 175 (24 residues), see Phobius details PF00672: HAMP" amino acids 173 to 225 (53 residues), 40.1 bits, see alignment 5.5e-14 PF00512: HisKA" amino acids 231 to 294 (64 residues), 47.2 bits, see alignment E=2.9e-16 PF02518: HATPase_c" amino acids 344 to 446 (103 residues), 76.4 bits, see alignment E=3.5e-25

Best Hits

KEGG orthology group: None (inferred from 48% identity to phe:Phep_1344)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>ABZR88_RS14995 cell wall metabolism sensor histidine kinase WalK (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKIKNRLAIYFTLLSSALLLVVMVLMYFAFSYFFRTDFYEHLHDRAKVAAQLYLEADEIS
SDSLNHVRERMLEKLPNEVIRIYSDDNRASFIKDESQYWDSKVINHVRRNHDLSFNEGNR
QTVGLFYPDNQGNFVILTSAVDTQGHARLVDIIQVMAVVFVLINSVLFFIGRWFAQEALL
PIVRLADEMKRISASQLNFRADEGNGKDEISSLAQSFNRLLEHLQNSFELQQTFVANASH
ELRTPLTSITGEIEVALHKKRSTEDYEALLSSILADAGRLTETVTGLMELAQTDMEYTQA
RTEPIRVDDLLWELQGHWSHKPLKVDMALLPDDEQALVINANASLLKIAFNNIIGNAFKF
SEGKPVSCTLRADDKQMVIAIKDQGIGIPEDELVKISTPFYRGTNGRSLPGNGVGLYVTF
KIFQLFNGRVDVESTVNKGTIFFITFTPQF