Protein Info for ABZR88_RS14195 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: sigma-54 dependent transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 PF00072: Response_reg" amino acids 6 to 111 (106 residues), 75.9 bits, see alignment E=7e-25 PF00158: Sigma54_activat" amino acids 147 to 312 (166 residues), 232.6 bits, see alignment E=5.5e-73 PF14532: Sigma54_activ_2" amino acids 148 to 317 (170 residues), 76.9 bits, see alignment E=4.8e-25 PF07724: AAA_2" amino acids 167 to 287 (121 residues), 29.3 bits, see alignment E=2.1e-10 PF07728: AAA_5" amino acids 170 to 288 (119 residues), 32.4 bits, see alignment E=2.2e-11

Best Hits

KEGG orthology group: None (inferred from 67% identity to sli:Slin_3143)

Predicted SEED Role

"Response regulator of zinc sigma-54-dependent two-component system" in subsystem Zinc resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>ABZR88_RS14195 sigma-54 dependent transcriptional regulator (Mucilaginibacter yixingensis YX-36 DSM 26809)
MSAYHIFIVEDDPWYGEILQYHLSLNPDYKITRFMTGKDCLRELHQKPDLISMDYSLPDM
NGAELLKQVQQVNPAVPVIVISAQEDITTAIDLYKKGIADYLVKDDHTKDLLWNAVNRIR
ENQALRKEVETLREELGHRYEFEKVIKGASAAIKKVFTLMEKAARTNINVSISGETGTGK
ELVAKAIHYHSDRKKKPFVALNMAAIPSELLESELFGHEKGAFTGALTRKLGKFEEANGG
TIFLDEIGELDVNLQSKLLRVLQERELVRVGGSEKVKLDIRLIVATHKNLQDQVKQGYFR
EDFYYRIMGLPIELPPLRERGGDVLLLARHFLEEFCKENKLPLKQFSTEAKEKLMRYEFP
GNIRELKSMIDLAVVMSDGQEIQVEDIRFSAPRSEEDIFSKEKTLKEYTVLIIQHFLDKY
NRNVLKTADKLDIGKSTIYKMIQEKELEG