Protein Info for ABZR88_RS14015 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: protein translocase subunit SecDF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 988 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 516 to 535 (20 residues), see Phobius details amino acids 542 to 564 (23 residues), see Phobius details amino acids 570 to 591 (22 residues), see Phobius details amino acids 612 to 633 (22 residues), see Phobius details amino acids 639 to 662 (24 residues), see Phobius details amino acids 699 to 718 (20 residues), see Phobius details amino acids 821 to 839 (19 residues), see Phobius details amino acids 846 to 868 (23 residues), see Phobius details amino acids 880 to 901 (22 residues), see Phobius details amino acids 931 to 950 (20 residues), see Phobius details amino acids 956 to 980 (25 residues), see Phobius details TIGR01129: protein-export membrane protein SecD" amino acids 76 to 663 (588 residues), 394.8 bits, see alignment E=7.6e-122 PF21760: SecD_1st" amino acids 177 to 234 (58 residues), 67 bits, see alignment 1.6e-22 TIGR00916: protein-export membrane protein, SecD/SecF family" amino acids 420 to 657 (238 residues), 236.4 bits, see alignment E=4.7e-74 amino acids 794 to 972 (179 residues), 160 bits, see alignment E=1.1e-50 PF02355: SecD_SecF" amino acids 498 to 669 (172 residues), 81.2 bits, see alignment E=1.4e-26 amino acids 792 to 984 (193 residues), 205.7 bits, see alignment E=9.1e-65 PF07549: Sec_GG" amino acids 713 to 739 (27 residues), 32 bits, see alignment (E = 1.3e-11) TIGR00966: protein-export membrane protein SecF" amino acids 718 to 975 (258 residues), 242.2 bits, see alignment E=1e-75

Best Hits

KEGG orthology group: K12257, SecD/SecF fusion protein (inferred from 57% identity to shg:Sph21_2971)

Predicted SEED Role

"Protein-export membrane protein SecD (TC 3.A.5.1.1) / Protein-export membrane protein SecF (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (988 amino acids)

>ABZR88_RS14015 protein translocase subunit SecDF (Mucilaginibacter yixingensis YX-36 DSM 26809)
MQGKGVIKFFAIILAIACLYQLSFTWVTHNVESKAKAYANGNEDKEKAYLDSISNQPVYP
IFKHDYTYCKNNELALGLDLKGGMNVTMQIALSDLIKSLSDNSTDPAFNQALSKANEDAR
TSPDNYITLFINEYKKINPDGKLAPIFATKDNQSHLKFDASNSEVESYLKEQANVAVTQS
FNILRTRIDKFGVTQPNIQLQEGTNRILIELPGVVDKERVRKLLEGSAKLEFYNTFDNAE
VIGLLQNINTILAGKAKTAKKDTVKAAANTVAKADTAKATGGSLLNKVNKSAANDTAANK
STAQNEAANPLFAKMRPAFAQGQNGQMMPIPGPLVGVVAQKDTATINKYLSEPEVKAVIP
QNMKLVWGIKPETGTKNIGLYALKLSGATNGPVLDGSAITDAASDNDLQKGGYEVRMVMN
SQGAEAWARITTEAAGNPNDQSDNRAIAIVLDNNVVSAPNVQNAITGGISSITGNFTKEE
TDDLANILKAGRLPAPARIVQEEVVGPSLGQEAINHGLMSCVAGLVVVLVFMIAYYNRAG
TVAVVAVIINVFFLMGVLTSLHAVLTLPGIAGIVLTLGIAVDANVLIYERVREEMAHGKS
LRVSINDGFKHALWSILDSNISTFLTGLILFLFGSGPILGFATTLMIGIATSLFCSLLIS
RVIFEWMLEKELDIKFANPWSSHTFKNANFAFVKNRFKFYAFSGIFIAIGIGSMVTRGFN
YGVDFQGGHTYVVTFDKAASVQEIRDAADKTLGVGKTEVKTFGSDNRVRMTTNYLIDDNT
KEGDDKVEASVRKVLGSINPHFTIDSQQKVGPTIANDLKRSAVWTVLFAIVIISVYILIR
FRKWQFSLGAMVATAHDALLVLSFFSLFKDALPFSLDIDQAFIAAILTVIGYSINDTVVV
FDRIREYLGHTKDGNTTTVINQAINSTLSRTIITALTVIFVLLVLFIFGGDVLRGFSFAL
LIGVCFGTYSSICVATPVIIDFGKKDLK