Protein Info for ABZR88_RS13575 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: VIT1/CCC1 transporter family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 148 to 168 (21 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 204 to 226 (23 residues), see Phobius details PF01988: VIT1" amino acids 13 to 223 (211 residues), 246.1 bits, see alignment E=1.7e-77

Best Hits

Swiss-Prot: 52% identical to VIT1_ORYSJ: Vacuolar iron transporter 1 (VIT1) from Oryza sativa subsp. japonica

KEGG orthology group: None (inferred from 73% identity to sli:Slin_1499)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>ABZR88_RS13575 VIT1/CCC1 transporter family protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MHHEQHLKSSDTIRDIVIGMSDGLTVPFALAAGLSGAVNASGIVVTAGLAEIVAGSIAMG
LGGFLAGKTEMDHYRSELKREYEEVEKVPEVEKKEVMEIFADFGLSEPLQQQIADEMARD
KDKWVDFMMRYELGLEEPHPNAATKSAATIGLSYAIGGIIPLSPYFFISSANTALGYSCI
IGLLCLFIFGYLKSKVTGQPVWSGAIKVAITGALAAGAAFGIAKLIGAH