Protein Info for ABZR88_RS13095 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 transmembrane" amino acids 220 to 242 (23 residues), see Phobius details amino acids 271 to 296 (26 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 611 to 634 (24 residues), see Phobius details amino acids 661 to 683 (23 residues), see Phobius details amino acids 695 to 718 (24 residues), see Phobius details PF12704: MacB_PCD" amino acids 30 to 182 (153 residues), 60.7 bits, see alignment E=2.6e-20 amino acids 426 to 575 (150 residues), 35.5 bits, see alignment E=1.3e-12 PF02687: FtsX" amino acids 226 to 342 (117 residues), 50.4 bits, see alignment E=2.2e-17 amino acids 613 to 721 (109 residues), 40.2 bits, see alignment E=3.1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (732 amino acids)

>ABZR88_RS13095 ABC transporter permease (Mucilaginibacter yixingensis YX-36 DSM 26809)
MYDQGAPLALARDVKASDPRVKEIGILLRMHNINVAIPQNNQTTKRMFAEHENIGITDGH
FFNLFDYEWEQGNKNTALAEPNTVVLSHGLAEKYFGGQDVMGKTIVVDNKNTFKVTGVVK
DHPANTDIKSDLFLSLATLDNIYPDFVKDLKKQWSFINSTNSVYFCLRPGANPRDVERNI
AQLNIKAQGANMAKAFHFILLPLSEMHFDGRFTGVIQHSLLTTLGAIALLLLIIACVNFI
NMATAQSFKRAKEIGTRKVLGSTPQAIFLQFIAETAYIVTFAALLSFVIVTVSLPILNSW
VHTQLSFNVFTDYRLAGFIAAGLIIVTLVAGSYPALILSRFKPADALKNQVGKQTRTTVL
GRKGLIIVQNIVAQVLIISTIIIAMQVKYLRTADLGFNKDAVIMLPIPGNGQSQTDYLRN
QLLNDPAITNVSFCHNAPASDNANGGSIKYDTRDWEKFAGATTVADANYVKTFGIRLVAG
RNFRESDKPREYLINETLMHMLGFNDPEQVIGKQFTAGDLSGNAGTIVGVVKDFHAKSFY
APIGPEYITTFRYRYQYAAVKINTNESSAVIDRIKKQWQSVYPEHVFEYRFLDEQVADFY
RKEDLLNKLISSSAVVAIFISCLGLLGLISLLAIQRTKEIGIRKVLGASVTHITGLLSMD
FLKLVLIAIVIAGPIALLMMSKYLQNFAYRIEIKWWVFALTAFMASAIALITVSFQAIKA
AVANPVKSLRSE