Protein Info for ABZR88_RS12990 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: TIM-barrel domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 717 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13802: Gal_mutarotas_2" amino acids 80 to 152 (73 residues), 30.7 bits, see alignment E=7.8e-11 PF01055: Glyco_hydro_31_2nd" amino acids 224 to 517 (294 residues), 156.4 bits, see alignment E=2.5e-49 PF21365: Glyco_hydro_31_3rd" amino acids 562 to 631 (70 residues), 66.2 bits, see alignment E=5.8e-22 PF17137: DUF5110" amino acids 649 to 703 (55 residues), 46.6 bits, see alignment 6e-16

Best Hits

KEGG orthology group: K01811, putative family 31 glucosidase (inferred from 70% identity to phe:Phep_2697)

Predicted SEED Role

"Alpha-glucosidase (EC 3.2.1.20)" in subsystem D-Galacturonate and D-Glucuronate Utilization or Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (717 amino acids)

>ABZR88_RS12990 TIM-barrel domain-containing protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKATLKICLSLLILLSGFNSGLQAQSITWAEIEPGVWKGITGKLDAFDLVKAAGIKPLHN
ELQQMPKAGFPLPQQEITAKQTDGKTYLRFPLERSEQLFGFGLNFQTIFQRGKVLTLHVD
NYAGKDNGRTHAPTPFYVSSKGYGVFINSARYLTVYAGTAVNRDSKTPPVIQDRNTDKNW
SSHPYSDAVEILVPAQGAEIYVFAGPTALDAVSRYNLWNGGGCLPPRWGLGFTQRVQRLT
DAKGVEDEARAFEEKGYPLDFIGLEPGWQSKSYPCTFEWDKTRFPDPAGLVQRMLKKNIR
LNLWTNPYISPQAPVYQHILPYTASHTVWNGAVPDLTMEQGRKIFFGELEKGKIDIGICG
YKMDEVDGGDTYLWPDVATFPSGHSAEQMRQTYGLMMQRYTYEIYHQRNQRTFGLVRASN
GGGSSFPYVIYNDYYNHQDFITALVNSGFSGVLWTPEVRASKTAEEWLRRFQSNIFSPMA
MINAWASGTKPWTFPEVAGQIKTLAALRMQMMPYWYSEFARYHFKGIPPFRAMYLEDGFS
ASGDSKPTKKGGLEENPYEEAVSKEVKDQYMAGSYLLVAPMFTGEQSRKVILPKGKWYDF
YTGKYAGDGEVITVTPGLDKIPVYVKDGGIIPMMPAMLHAPKNGQKVDLEIRYYGEKPGE
YQLYDDDGETFNYEHGEYSFRTIKILKQNGGIKGTLSPAVKGKPDNVGKVTFKMMTE