Protein Info for ABZR88_RS12805 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: SLBB domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 831 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 809 to 829 (21 residues), see Phobius details PF02563: Poly_export" amino acids 153 to 229 (77 residues), 58.4 bits, see alignment E=6.4e-20 PF10531: SLBB" amino acids 238 to 282 (45 residues), 25.5 bits, see alignment 9.9e-10 amino acids 321 to 364 (44 residues), 41.9 bits, see alignment 7.4e-15 amino acids 404 to 450 (47 residues), 26.2 bits, see alignment 5.8e-10 amino acids 494 to 538 (45 residues), 42 bits, see alignment 6.8e-15 amino acids 592 to 628 (37 residues), 22.5 bits, see alignment (E = 8.2e-09)

Best Hits

KEGG orthology group: None (inferred from 52% identity to shg:Sph21_1794)

Predicted SEED Role

"putative polysialic acid transport protein" in subsystem Rhamnose containing glycans

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (831 amino acids)

>ABZR88_RS12805 SLBB domain-containing protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MIRLKYILAFLITFSFLVASKLSVAQSTSQNISNVNVDEVSDDKLMQLLQQAQAQGLSDD
QVVARAQAQGLSASQADKLRQRISVLRGSGNTTSVNGRDSLISYSRQLNYKPEVDSGKRE
KKDLFNSITPRVFGADLFNNTHITFQPNLRLATPLNYILGPDDQLNISVYGNSLANWKLA
ISPEGNINIPGVGILNVAGKTVEQATAAINSKLAANNYAIGRGTNVKVTLGDIRSIKVII
NGEVTQPGTYTLPSLATAFVALTAAGGPNANGSFRQIEIIRNNRIIRRLDVYDFLLKGDQ
KDNISLQDQDIIRVPTYKVRVALLGEVKNPALFEVLPGETINDVIRFSGGFTDQAYTGRI
KVTQIIDQQLHIGDIFESDYKNYLPLRGDKYVVERILDRYENRVVIKGAVFRPGEYELHK
GLTLSQLIKNAAGLKEDAFTGRGIITRLKPDNTYEQLSFDVLGVVNNTTPDITLQREDMV
EISSIFDLRDKYTVSIKGEVRSPGQFAFAENMSVQDLIFKAGGFTEGASAKRIEVARRIN
NSDPLSKNSAVATVFNVNVDRELKSNDAKFILKPYDIVSIYTLPGYEAQKTVKVEGEVLY
PGSYTIQKKNEKISDIIQRAGGLTASADVDGGTLKRDNIAILGIDKNKVDTTGIEKERME
RLGRLQRGYKDSVKNTAVNAATAQMRNDYVGIDLKKILKSPGSNNDLLLEDGDIIRVPKQ
QQIVRVNGEVLYPSAVVFEKSKSFSSYVSNAGGYSPKALRRGAYVVYPNGTVKATHKFLF
FNSHPGVRPGSEIFVPVKPERKGLGTTEIVGLTTGLASLGAIILGILSLHK