Protein Info for ABZR88_RS12020 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: BamA/TamA family outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 787 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF07244: POTRA" amino acids 89 to 138 (50 residues), 22.3 bits, see alignment 1.7e-08 PF01103: Omp85" amino acids 350 to 750 (401 residues), 69.4 bits, see alignment E=4.1e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (787 amino acids)

>ABZR88_RS12020 BamA/TamA family outer membrane protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKAYPNLIPKSFAILLIISVFLATGCSLTRKLKEHQALVRKITVKGVDKEFAEAAPTFVD
KQEQPNNWINLNLYYMFSHDGKKDVGEPPAILDTQLVEYSRQQIERFLQNKGYLKAKVTD
SIAVKKKKAHLYFTAVEGPMFRIRRITDSILDPSVRGLYRNNRNNFSHIQPGGRYDTDSL
AYDRDEFFQVMKRNGYYDFYRQYINYSVDTAFDNSVADVRMIIGNPEGKKKHPIYTINNT
LVTISASNGRTDGKADTLQVDSQFRFVDYSHSFKPKVVTNYVFQKKGDIYNIDKQTLTTS
RLSELNVFRNVPNPNYEKKGDSTNKLNMQIDITPLKKMSDRVEGEFIFNNGRYGYNVGNT
FTNRNLFKSAAILQVKLNWSVLFDNGNNNINDNGVENQEFKTGVSLTYPRLITPFSVPTL
GEYGVPHTTFSSNYSLFYQKGLVTRKSFVNSLTYDFAETAHKLHTFTPIDIEFSSGVIDP
AARDSLEKNGRDAYLRLIGRTIFTVGSQYTYQVNADMLNSYGSFTYFKGSVDVGGNTMSL
VTNALNTSRDSIGARTLLGHAFSQYVRGEADLRIYRGFGNEKQFVFRINPGIGIPYGNSS
QMVFEKEFYAGGANDMRAWLPRTLGPGQFNRASYGVGLVGDDLRQRLKYLDQFGEIKIIG
NAEYRYKIADNFFGSKLKGAFFTDFGNIWRLKETSDNPRGEFKLNNLWQSTAIGIGTGLR
FDLTYFVFRLDAAFKFKDPQFDGADQWVLIQHFNELFHNHDFKNNYYQTNGESYNFMQLN
FGIGLPF