Protein Info for ABZR88_RS10150 in Mucilaginibacter yixingensis YX-36 DSM 26809
Annotation: NADH-quinone oxidoreductase subunit D
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 69% identical to NUOD1_CYTH3: NADH-quinone oxidoreductase subunit D 1 (nuoD1) from Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
KEGG orthology group: K00333, NADH dehydrogenase I subunit D [EC: 1.6.5.3] (inferred from 80% identity to shg:Sph21_3340)Predicted SEED Role
"NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)
MetaCyc Pathways
- aerobic respiration III (alternative oxidase pathway) (3/3 steps found)
- aerobic respiration I (cytochrome c) (3/4 steps found)
- NADH to cytochrome bd oxidase electron transfer I (1/2 steps found)
- NADH to cytochrome bo oxidase electron transfer I (1/2 steps found)
- Fe(II) oxidation (2/6 steps found)
- NAD(P)/NADPH interconversion (2/6 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 1.6.5.3
Use Curated BLAST to search for 1.6.5.3
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (379 amino acids)
>ABZR88_RS10150 NADH-quinone oxidoreductase subunit D (Mucilaginibacter yixingensis YX-36 DSM 26809) MVLNMGPQHPSTHGVLRLELITDGEIVKEVIPHIGYLHRCFEKHAESLTYQQTIPFTDRL DYLASMNNSHIWVMGVEKMLGIDKEIPKRIEYIRVLVCELNRIASHLIAIGTYGIDIGAF TPFLWCFRDREHIMGMLEWASGSRMLYNYIWVGGLFYDLPVGFEERCREFIDYFKPKMVE LNGLLTNNEIFIKRTANVGVLPMDVAINYGCSGPMLRGSGLKWDLRRIDGYSVYPELEFD VPIGKGEMGALGDCWDRYKVRVEEIEQSVHIVEQCLDRLQKELKRTPDFDPRAKMPKKLV PKPQDYYVRGEGAKGELGFYFMHQKNEEGRDTEIPFRVKSRGPSFCNLSVLPAISKNVMI ADLIAIIGSIDFVLGEVDR