Protein Info for ABZR88_RS09595 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: putative LPS assembly protein LptD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF19838: LptD_2" amino acids 233 to 713 (481 residues), 552.9 bits, see alignment E=2.9e-170

Best Hits

Predicted SEED Role

"FIG00907313: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (911 amino acids)

>ABZR88_RS09595 putative LPS assembly protein LptD (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKFLRLFFLLVVILALNELASANKSGKSQPVWLKDTIIKLDPVKDRKLLRGNKSSIDTIR
KDTTKRDTTKKDTVAKNPGELTEITTAKADDSTVYDKEHQVGYLYGNARVTYGDFELDAD
YIRVDQKTHLVFASGRIDPKTHRYKGRPISKMGKDDKPMTADSLYFDYKTKKAHVYNGST
EQDGNFVSGGQIKKLNDSEFAYHNVLYSTCDKPYPYTDFGIVITKGIAEKKRIISGPAYM
EIEGVPLPFAIPFGFFPKPDTRTSGFILPTFGEDATLGFYLRNFGYYFGINDYMDFTTQE
TLYSKGSFESTNTARYIKKYKYQGGLTFSYGQHYYGLEGDPPQRDFNIQWQHSQDANAHP
GTTFSASVNAGTSSYYSNNPGATNYNPQAIVQNNLHSSIAYAKSWEGTPFNFNASMTHSQ
DLARKTITLELPTFSFNMATINPFDSKDRVGPQKWYQRITVGYSLQGKNAVTAVPESELF
SKETLTKRLQNGFQHQIPVGFNQTLLKFFQFNVSANYNERWYLQTYRKRYARGSLSGIDS
MIVDTVPGFRRVGDYSMSAGFSTKIYGIMQFKGKLKAIRDVITPNISFSYRPDYSSLSYA
YNQVAVSNATVPFQASYNRYSIFDGTPYGGPSGGRQAGLSFSVDNTIEAKVRPSAKDTST
QDKKIPILQGLSASTFYNFAADSFRLENISLSGHTALFNQKINVSFSGILDPYVTKVYDT
VANNQVYRVARRFDHYTFQDGRLPFLTNFNLTMGGSLNSASFHPASTNTAAAVPGTSAQT
MTVQQADRLALLNSDPSAYIDFNIPWNVSMSYSFNYSNSHILTTTTNTLQLNGDFSLTPK
WKIQYSTNYDIKANQFTMTSFNIYRDLHCWDLSFQWVPFGYYRSYNVTLKVKATILQDLK
LSKRKDYYNNF