Protein Info for ABZR88_RS09020 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: family 43 glycosylhydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details PF04616: Glyco_hydro_43" amino acids 88 to 356 (269 residues), 281.1 bits, see alignment E=1.1e-87 PF17851: GH43_C2" amino acids 386 to 546 (161 residues), 31 bits, see alignment E=2.1e-11

Best Hits

Predicted SEED Role

"Beta-xylosidase (EC 3.2.1.37)" in subsystem Xylose utilization (EC 3.2.1.37)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.37

Use Curated BLAST to search for 3.2.1.37

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (557 amino acids)

>ABZR88_RS09020 family 43 glycosylhydrolase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MPNKEALKLCFRAFSFSAHNVTYLYTFSLLLAILTFKNYVSVTNQYSLKIVMNLFYKSII
ASFLVAGSLSASAQTVSDRAGDLGNNTYLNPILGGDYPDPSIMRDGKDYYMTHSAFDYLP
GLTVWHSTDLVNWEPISYGLKTYLGSIWAPDICKHGNLYYIYFTVARKGNYVVYAKDPHG
PWSEPVDLKVGGIDPCHIVDETGQRWLFLSGGERAKLSADGLSVVPGTLQKVYNGWDFPD
DWVTEGKAMEGPKLKKVGQYYYWLSAEGGTAGPPTSHMEVVARSKSINGPWENAPNNPLI
HTYSGAEKWWSKGHASLIDAPDGKWWIVYHSYQNGFLNLGRQTLLEPVQFTADGWIKAPT
GRGVEKPIVKPIKSTKPIDRLAHLDEYRIGLEWKYYEKYDPARASAKNGVLTLKAQGTTP
QESAPLLFVAGTPNYEFSFKMEKDADAVAGLVMFYNADFYVGTGFDSKSRMRWRKGAAKG
RYEHTGNNLLWMKLRIVDNIVTGYYSYDGKDWKKEQWSMEVSGYNHNTLYDFESILPGIF
AYGKGEVKFSDLKFTRL