Protein Info for ABZR88_RS08965 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: DegT/DnrJ/EryC1/StrS aminotransferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 389 PF01041: DegT_DnrJ_EryC1" amino acids 12 to 352 (341 residues), 303.2 bits, see alignment E=4.4e-94 PF01212: Beta_elim_lyase" amino acids 33 to 247 (215 residues), 35.9 bits, see alignment E=8.1e-13 PF00155: Aminotran_1_2" amino acids 52 to 287 (236 residues), 37.5 bits, see alignment E=2.6e-13

Best Hits

KEGG orthology group: None (inferred from 65% identity to psn:Pedsa_0815)

Predicted SEED Role

"UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-)" in subsystem Lipid A-Ara4N pathway ( Polymyxin resistance ) (EC 2.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.6.1.-

Use Curated BLAST to search for 2.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (389 amino acids)

>ABZR88_RS08965 DegT/DnrJ/EryC1/StrS aminotransferase family protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MIPVTKPFLPAEKDFRDYVKGIWQRQWLTNNGPLVNSLELKLKEYLDLKYLLYVSNGTIA
LQIAIKALDLEGEIITTPFSFVATTSAITWQSCKPVFVDIDPNTLNIDPEKIEAAITPRT
TAILATHVFGNPCNIYAIQAIANKHKLKVIFDAAHAFGVRYKGHSIFEYGDVSTVSFHST
KLYHSIEGGAVFTRNPDVLRKMALMRSFGYSGIDTFSEQGINAKNSEFHAAMGLCNLKYV
DKILQRRKYLYQQYKLRLKGFNVEFQHIENPDDYNYAYFPVIFPSEELMLECKAALELEQ
IYSRRYFYPSLSSLPYVEQVPMPICDSIASRILCLPLYHTLTTAELDLICRVLLRTQRFG
KLKAASTNSFNREIVPHIKSKLNQKAVRN