Protein Info for ABZR88_RS08790 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 659 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF14322: SusD-like_3" amino acids 26 to 223 (198 residues), 58.2 bits, see alignment E=1.4e-19 PF07980: SusD_RagB" amino acids 337 to 659 (323 residues), 77.9 bits, see alignment E=1.1e-25

Best Hits

KEGG orthology group: None (inferred from 63% identity to shg:Sph21_2650)

Predicted SEED Role

"RagB/SusD domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (659 amino acids)

>ABZR88_RS08790 RagB/SusD family nutrient uptake outer membrane protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKRVYKRYFQTAALAAVTLAGCNKILDEKPRATFTPDFFSTQAGVQGGITSLYGHLRYMY
GNGYFINSNEAGTDEETWAQLADANTKNIDFSGVGTINKQTDNSGIVWNNNFPDINTASG
VIENGGKVGVSDALIAEARFFRAFDYFLLVQTFGGVPLDLGAGELKFNTSTVRTSKRNTV
PEVYTKAIFPDLLTAINNLPTTARVTGGLTKNVARLILAKAYLTYGWWLQNPNNIPTYPD
APRTDPGGHDATYYFNQAYTVAAAGIEAPSPYGLQPTFYDVNVATNDRNNEVMLYADHTQ
SSSQYNGGDLSYSSGGFSTDNFASWFQQWNYTIITSSKTNTSWSAYNSVQRAAVQSLGRP
WTLLAPPQAVFKVAFADKVNDSRYDGTFVTKYHCNMKEAGYAGSTLYNANFLPIGEGDVV
LSFLDNDVTGVDYSNSTYKSSVGAGVLPGRADFVIEPSKISRIAYPANFKLGPYRTDNNG
GLGSPNGSSTRPFPAVKFSEFFFIAAEAAVKGATTRAISGTYSNDGTARGLINVLRARAG
KWRFDNGNQVTKVQDNSAAMTAATPAVIDINYILAERTREYFGEGYRWFDLVRTQKWTEL
SSTLQIAGATNPNDFNDHSVGTFTRTIVPTNYLRPIPQSQIDALDMSAADKAAYQNPGY