Protein Info for ABZR88_RS08535 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF08659: KR" amino acids 4 to 161 (158 residues), 42.5 bits, see alignment E=2.5e-14 PF00106: adh_short" amino acids 4 to 185 (182 residues), 173.4 bits, see alignment E=1.4e-54 PF01370: Epimerase" amino acids 5 to 172 (168 residues), 39.9 bits, see alignment E=1.1e-13 PF05368: NmrA" amino acids 5 to 72 (68 residues), 21.6 bits, see alignment E=4.6e-08 PF13561: adh_short_C2" amino acids 9 to 186 (178 residues), 137.4 bits, see alignment E=2.1e-43 PF13460: NAD_binding_10" amino acids 9 to 137 (129 residues), 38.8 bits, see alignment E=3.2e-13

Best Hits

KEGG orthology group: None (inferred from 48% identity to cpi:Cpin_4835)

Predicted SEED Role

"Short-chain dehydrogenase/reductase SDR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (270 amino acids)

>ABZR88_RS08535 SDR family oxidoreductase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKNTILITGASSGFGRAAVKLFQEQGWNVVATMRSPEKEETLRGLENVALVRLDVTNPES
IREAVAEATSRFGRIDVLVNNAGYGTLGALEAATAEVIRRQLDTNLIGVIQVTQAVLPVM
RAQRAGVIINVSSVGGRATFPFSSLYHATKFAVEGLTESLQYELNPLGIRLKIVEPGGYK
TDFVSRSMDYFGAGGIADYQQAFDRFAGKLETWPLSENIGEVADAIFRAATDGTEQLRYP
TDIHGQQLLEARQQMDDVAFKQLMITQTLD