Protein Info for ABZR88_RS08095 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1051 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 30 to 1051 (1022 residues), 775.5 bits, see alignment E=1.1e-236 PF13715: CarbopepD_reg_2" amino acids 31 to 112 (82 residues), 55 bits, see alignment 6.7e-19 PF07715: Plug" amino acids 120 to 228 (109 residues), 64.9 bits, see alignment E=8.9e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 205 to 234 (30 residues), 48.2 bits, see alignment (E = 7.1e-17)

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1051 amino acids)

>ABZR88_RS08095 SusC/RagA family TonB-linked outer membrane protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MTKAVHPKPFTVIITLLLAMLTLHGFSQSTVSGQITDGKTHETVIGATIRVKGTSTAVAS
DGSGNFKIAATQGAILQISFLGYNNQEVTANTKSFMHIALTPVANDLNEVIVVGYGTKKK
ETLTGAISQVGAEVFKDRPVPNAALALQGEIPGLVITRNSPRPGNEGLAIRLRGESSTSA
VSPLIIIDGVPTVADFELSTLNPNDIESVTALKDASAAIYGARAQGGVILITTKRGKGKA
QVTYNPSFSLNTIAKSVPWGNMSEWAQLYLQTSTQDRVDASGNPIQYLPQWTLANLQRMA
NGESFDYTQPSGLVSHYGDNNWQNALYGNSFSEIHNLSLRGATDKTAYAASLGYSNNKSI
LKTAYDGEIKYNARFNYDYDLSKNVKWSSGISYDTRTVQSPKNGVGAGFFDAPIFPVYNV
NGNYYDDYGYRNPVAMTQAGGRIRNTDNFFRFNTKLSVKVFDGLTLSGTAAITKRDGMNN
SYNQTYNLYSWTGDRVTSTQYNPAAVSEVIANTIYDNFGVFADYNKSIQGKHNFALTLGS
TAEKQEDRTLSAGRTGLLYPGLFDLNTATPVNATNGSSDVKVGLTSYIGRFDYDYNKRYL
IEAIGRSDASSRFDPDHRRQNFYGISAGWVISEEQFMKPLKFLNYLKVRGDYGETGGLGG
GTNGLSSTNGAIGAFNYVSSIGSGTALFGSSAATQGTNFISNINNLQLTWERMLNKDIGL
DFTLLNNKLSGSFDIYERKNTGLILSLIYPGVLGANAPPSNAGDLRVRGFDANINWRDKI
GEVSYNIGINFSNNKNLLIKRAGATAIAQGQNAPLQGYPLNSLFVYQTAGYFPTQAAADA
YYTKYTATTVGNLGSMTGNSKLRAGDLNVVDRNGDGVINMSDLYFAGDADPHYTFGTNLG
AQWKGFDLSAFFQGVLNQNLLRGGNARAPFFRNYLDINTYYVGKTWTPDNTGAAYPRLSF
DNNRNNWNWQFNDVNIQNLRYVRLKSLILGYTLPKTLISRVGLSRVRAYLSGNDLLTFSS
IKDGFDPERGSSSDSSYPFIKTYTFGLEVEF