Protein Info for ABZR88_RS08090 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 614 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF14322: SusD-like_3" amino acids 22 to 223 (202 residues), 93.5 bits, see alignment E=2.2e-30 PF07980: SusD_RagB" amino acids 319 to 614 (296 residues), 173.3 bits, see alignment E=9.8e-55

Best Hits

Predicted SEED Role

"putative outer membrane protein, probably involved in nutrient binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (614 amino acids)

>ABZR88_RS08090 RagB/SusD family nutrient uptake outer membrane protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKKYYYIIGLAVLLTAGACKKEFLDQQPLDSPTTASFFQNTSQFKSFANDFYNKMIGFRP
VTSGVTGGGNSNIYDFMDAGSDLTEAITSYGQGAISVPASDIYWVNAYAYIRANNVLIQA
ASVYTGDQAAIKQYVAAAYFFRAWHHFFLLKRYGGVPIITKVLDVNSPELNAPRNTRYEV
ANQILRDLDVAIAGLPLEANIAAADKGQVSQQAAKAFKARVLLYEATWEKYVGTTTDFAQ
NQKKGDSTTTWLTQAASLASQVMTDNTYSLFKGVDTLSYYYMFNLDDANSNPKGLTKTSN
NEYILSSHYDFTLLQGNANLTHTLGGYGPSRKMMDMYLCTDGLPFSVSPLAKGYAKMTDE
FDNREWRLRSLVYIPKKKYWGFGATTGANYNLANYITTFNFPAIITPAYPDLATNINGGY
GNRKFCSEESTRADYQESYDYPQIRLAEVYLIYAEAKCELGGGAISDADLNISINKIRAR
NNVAPLTNALIAPYPSLTMLGEIRRERALELYLENSRFDDLKRWGIAETELNQPIEGMVV
QYNGSATEVATGTNPITKNPLYNASKFVYGIDSKTGAVIIDPATNRKFKRMHYLYPIPND
QRSLNPNLVQNPNY