Protein Info for ABZR88_RS07580 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: outer membrane protein assembly factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 854 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF01103: Omp85" amino acids 607 to 815 (209 residues), 36 bits, see alignment E=3.1e-13

Best Hits

Predicted SEED Role

"Surface antigen (D15) precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (854 amino acids)

>ABZR88_RS07580 outer membrane protein assembly factor (Mucilaginibacter yixingensis YX-36 DSM 26809)
MPKNLQLLLLAAGMLPALHSAAQIPVENKKYFQDSVVVKAHPIYDKVTKTHRWLFGENYR
KEWAQPVKLPVIHLSTVYGGLTPVKEGGGMQSKSLRLVDKNGKEWVLRSVEKTPDKLLPP
NLRETFAIDWIDDALSAQHPYSALVMPPLAKAVNVPHTNPVIGLVADDPVLGEYKKVFAG
ILCLLEEREPNGDSDNTDKMMDNLVKDNDNRFDKDNFLKARMLDLMVGDWDRHEDQWRWA
VKKDGKKKFYTGVPRDRDQVFHVRQGLFPSIAGWSFIDPTLDDFNGTIPRVRYSLFKTRY
IQPYPDAQYNYDDYMRVVHEFTKAETNDVLEASLKLLPAESYRLRHDELLTKFKARRDAV
PAAMDDYYRFINKIVDIRLSNKNEQVKLTDAEGGLRVVVKKIDKSGDTEQKLMDVVYRPD
ITKEIRIYLQEGNDRVIVDNHSPIHIRLIGGHGEKEYEVKNTAHDVKLYDKPDSIKFTGD
ASLFRKHLSRDTGEVSFVRANRYDIWMPLATAGLNADDGFLLGAGFRYINQQGFRKLPYT
SMQSFMVTHSFATNAFRIKYNGEWMQAVGKADFTLQSYIQAPDNTMNFFGLGNETPLNKQ
PGYRRFYRTRFNEYQFDPALRFHPDSLSTFSVGPSLQFYSFDANENTGRFINQTAQLHSY
DSAYINRNKAHLGLVLNYISNHRNNPVLPSKGYYLSIQLQGYKGLNDYSNSFAQATAEFT
FYQKLFSNGVLSDRVGGGATVGKPAFYQSMFLGGQGNLLGYLQNRFAGQHILYNNLQARW
KLANIAGYILPGQLGVTGFFDAGRVWVNGQHSDVWHTGTGGGVYFAPASLIVVQLLAGHS
NEGWYPYFSMNFRI