Protein Info for ABZR88_RS07475 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: IS21 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Swiss-Prot: 40% identical to Y4BL_SINFN: Putative transposase y4bL/y4kJ/y4tB (NGR_a00180) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 74% identity to shg:Sph21_4170)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>ABZR88_RS07475 IS21 family transposase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MSKIRQILRMYSQGRSKLSIAAQTGVSRNTAKKYLIAFDASGFTFEEINTLNDKELEDFF
GKSSERPPDKRMVALQRCFPQIDKELKRVGMNRRILWEAYIKEFPDGFKYTQFCFYYNQW
KARVNPTMHLDHKAGEKLYVDFAGEKLSIADKDTGEVIEAEVFVAILGASQLTYVEAVLS
QQKEDFIAACENALHFYGGVPAAIVPDNLKAAVTKSNRYEPTLNETFADFADHYGTTILP
ARAYHPRDKALVEGAVKIVYSRIYAPVRKEAYHTLAELNIAIKVALEAHNSQPLKGRNYS
RKLQFEEIERQALSPLPALRYEFKRQHQATVMKNGHVCLGIDKHYYSVPYRFIGRKVKLL
YSRTNVEVYYHYERIAMHRRIKSPYSYTTDKDHLASTHRFMTEWTPDKFLEWAASIHEDV
RLYILKILDRKQHPEQAYRSCIGILSLARKAGNERLASACRRALGYGVYNYKTIQQILEN
KMDSYEESLFADELPMPSHDNIRGENYYK