Protein Info for ABZR88_RS07240 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 940 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 63 to 940 (878 residues), 617.9 bits, see alignment E=2.2e-189 PF07715: Plug" amino acids 63 to 157 (95 residues), 26.6 bits, see alignment E=7.4e-10 PF00593: TonB_dep_Rec" amino acids 347 to 903 (557 residues), 33.4 bits, see alignment E=4.8e-12

Best Hits

KEGG orthology group: None (inferred from 40% identity to phe:Phep_1298)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (940 amino acids)

>ABZR88_RS07240 SusC/RagA family TonB-linked outer membrane protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MSIFTRFLWVLICCLCALSPAWANATKGVPVHGKQTAKDTLVTDTVKKVKQQIYFQTPSN
LSTASTAAISGSDFVSTPVVSYPLALGGRLPGLTVTQTNGEPLSEGFSMLLRGQSPVILI
DGIPRSVTEIGMNEIESVTVLKDAVSLAMLGIRGSSGAIAITTKKGSATKTQINFNLQTG
IQEPLKNLIGSPLNAYNYATLYNEALTNDGLSVATNGFSQVALNAYQSGSDQYKYPDVNW
RDQVMKNRAMTSRYDFNTSGGNNFVRYFVNLETYSQDGLLKTSDANKYNTTPNLKGYFIR
SNVDVNLTDKLSAGIYIQGRILNSTAPGNDGTAAIFNSILATPANAYPIYNPDGSYAGNS
QFTNNIVAQNVGSGYSLSNTRTVLSDFYLKRSLDDVTKGLWIKARASFFSNLNENIVRSK
SFAVFEQTGASTYRQYGTTSAQSNSNGISFQNRSDFEELSMGYTHNFDANNGLDATLLAN
RDNLINGSNLPYTIQGISGHVAYNYKKKYLAEVSFAQSGANRYPDNGGFKYGFFPAMGLG
WNINEERFMQPLTWLNHLKLYGSYGKLGHDNATYFLYQQVYNATPTAYFGSSAAAGTTVG
ESYLANPNITWEKSRNLNVGLEGAVLHNQLSFDVEYYNNLFSDLYIVRGTNTGMLGIDYP
SENIGRQRYYGWEAQLNWAQKKKSFGYFFGVNASLQNSKLLYSGEPTLKYSWMYKTGHPV
GQTYGYIADGLFRSQQEINGAPTIEGYTPQPGDIKYRDLNGDGVINQYDQTTIGSQKPTL
FIGSRLGFNVFNFDFSTLLQGVVNQQVYLSGADYWEFQSSNGGQAYTTQLNRWTPATAAT
ATYPRLTTSGGPRAGDVNNFVSSSFWLRNGDYLRVKTIELGYTLPGKTSRKVGVQSARIF
VNALNMATLKSLTFNGADPENYSGMYPIERVFNLGVNIQL