Protein Info for ABZR88_RS07230 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF20434: BD-FAE" amino acids 67 to 262 (196 residues), 90.2 bits, see alignment E=3.6e-29 PF07859: Abhydrolase_3" amino acids 78 to 281 (204 residues), 69.8 bits, see alignment E=7.6e-23 PF00326: Peptidase_S9" amino acids 216 to 302 (87 residues), 36.3 bits, see alignment E=1.1e-12

Best Hits

KEGG orthology group: None (inferred from 46% identity to shg:Sph21_0738)

Predicted SEED Role

"Xylanase" in subsystem Xylose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (309 amino acids)

>ABZR88_RS07230 alpha/beta hydrolase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MRLRSIIIGVILSCTLAIGYAQEIYPLYPGKIINSISAENLEKWETDPVTGTVRVSNVSI
PTIQVFPAKGSNATDAAVVIFPGGGYVKLGMNTKGTDVTNAFNAAGVTAFVVKYRLPSDR
TMPQKQLAPIQDARRAMQFVKENASKWHLDTAKVGVVGFSAGGHVASSLGTSFRDAVIDS
VPLKYIRPAFMVLIYPVISMDKKLGNGPSTQNLLGKNPDDAERARFSNQLHVDAHTPPAF
IVHAADDNAVPVKSSLLFYETLLQHGVKSELIVYPTGGHGFNLVTGNTTDKWIDHCVAWM
AANHWIPKP