Protein Info for ABZR88_RS06765 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: glycoside hydrolase family 15 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 797 transmembrane" amino acids 442 to 460 (19 residues), see Phobius details PF09137: Glucodextran_N" amino acids 7 to 271 (265 residues), 310 bits, see alignment E=1.5e-96 PF00723: Glyco_hydro_15" amino acids 290 to 681 (392 residues), 100.3 bits, see alignment E=1.2e-32

Best Hits

Predicted SEED Role

"Glucoamylase (EC 3.2.1.3)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis (EC 3.2.1.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.3

Use Curated BLAST to search for 3.2.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (797 amino acids)

>ABZR88_RS06765 glycoside hydrolase family 15 protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MIDNSNAPGAPGIPGKWTSSAKSGIGKSLSAFSQISFTLSHGTVNEVYYPREDNACIRDM
ELLVTDGHDFFSEEKRNTVHKTHTVEPGIPAYQIQNICKQNRYVIEKEIITDPLRSTLLQ
KVRFKPITGNRSDFKIFVLLAPHIGNIAAGNTAWLADYKGVDMLFAKRDGISIALSSCHP
FLKRSVGYVGTSDGYQDVLAHKEMQWQYTRAEDGNVALIAEIDLNAVGDEFTLALGFGRD
EFEAAQNARGSLIEGYDSARFTYIKQWQQWHENINECRLPDSIKESKLFRNSVAIMRMHE
ADRFPGGVIASMSIPWGFDKGDENIGGYHLVWPRDLVQCTGGFLAFGAKEDAMRVLTYLI
STQEHDGRWPQNMWLEGKPYWNGLQLDQIAFPILLVGRCRRENTLSAHLEDACWDSVKRG
ISFLISNGPISPQERWEEESGISISTISVCIAALLSAANFAEDRNQPDMAQYCRETADYW
NSQLENWLYAENTTLSRDLNIDGYYIRINPDGSPARDLGDRIIGVKNRPEDAKNVKIAEL
ISADALALVRFGLRDANNPRMRNTIKVIDKLLKVDTPHGPCWHRYNNDGYGEKADGSPYD
GTGIGRAWPLLTGERGHYELSAGNMHAAIEMLQTMQNFAAHDLLPEQVWDTDAIPEKDLF
LGQHTGSAVPLVWAHAEYVKLCASINKGSQFDLPDHTRERYVEHQIGSKFDFWRVDLPCH
HLNRGNALRIETRTPVTVRWTTDEWKTVNESPSNYSGLGIHYTDLPANKLNGTGVDFTWY
WNNEQRWEQKNYSVRIL