Protein Info for ABZR88_RS05680 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: glycosyl hydrolase 115 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 960 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF15979: Glyco_hydro_115" amino acids 171 to 514 (344 residues), 444.1 bits, see alignment E=4.4e-137 PF17829: GH115_C" amino acids 782 to 947 (166 residues), 133 bits, see alignment E=1e-42

Best Hits

Predicted SEED Role

"FIG00620252: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (960 amino acids)

>ABZR88_RS05680 glycosyl hydrolase 115 family protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MSLSAASAFVLVCASTAFADQFPLVTPQSKIAIVYDAAECKLDSISANLLADDIQRVSGY
RPVVSPDLSTVKGDAIIIGSINSKQVSALKQPAMVPALKGKWESYAFRLLNHPTPNINKA
LVIAGSDYRGTAYGVFEISARIGVTPWYWWADATPTVKKELYVDINNEVSAEPSIKFRGI
FINDEDWGLQPWAAKTFEPETKDIGPKTYAKVFELLLRLKANLIWPAMHPSTKPFYHYPD
NIKVAKDYQIVIGSSHAEPMLRNNVGEWNEKTMGAFNYLTNKDKVYDYWESRVKESKGVD
AIYTVGMRGVHDSGIEGVKTPKEAVPLLQRIFDDQRALFKKYINPDATKVPQAFTAYKEV
LDVYDAGLKVPDDVTLIWPDDNYGYIQRLNNEQENKRSGGSGVYYHVSYWGRPHDYIWLS
STSPGLIREEMSRAYEMNARNVWVVNVGDIKPAEYDIQYFLDMAYNVKPFLNTQFVKPHL
KAWVADNLGAEHADEITDVMWKYYQLAFERRPEFMGWSQTEPTTPVHPTAYNHFSFGDQA
QRRMDAFEALEKEVKTLQASIPTQKKDCFFQTVYYPVVCASEMSKKFLYTDKALLYGKQG
RISAAYYDTLARGAYNTIAAETDFYNKQMSNGKWRNMMSMGPRSLPVYAPPGANHPIAKR
TDVIGVSTEGGAVDSLAHNYSLSLPGFDGIDGQSHFMDVFLTRAENVHFSLKTSVPWIKS
SVTAGDLDPSALKSQQRIWITVDQAKLQPGLNSGVITLQAGAIKYTINVSANNAGAPKGF
TGFVAADGYVSMNAKHFQDVGNDALHYWSSVAGLGATDQSVEALPLNAKTRLTDDGSAVI
KNPSLSYRFYTRSAAPAAINIVTLPTFALNSNYGVRYGVSIDGGPVSTLNFKTFGRSEEW
KQAVLSNSITRTIKLPQLGAGVHTLKIFMIDPGVILDRIVVNLGGADAYYGLLPESKMIK