Protein Info for ABZR88_RS05445 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF14322: SusD-like_3" amino acids 22 to 230 (209 residues), 71.8 bits, see alignment E=1.4e-23 PF12771: SusD-like_2" amino acids 93 to 204 (112 residues), 27.1 bits, see alignment E=3.2e-10 PF07980: SusD_RagB" amino acids 335 to 494 (160 residues), 107 bits, see alignment E=2.2e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>ABZR88_RS05445 RagB/SusD family nutrient uptake outer membrane protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MRKIATILLLILVSAGNYSCNKYLDLKPNDGIIRDIFWQSKEQLQAATLGCYNAMEDVPS
GRTPAELFFVWGELRADMISPGLGMGAEELSFVNYNILSTNSFADWRNIYRVINICNTVI
DFGPNVKSIDATLSTTELNGYLAEALTVRAMMYFYLVRTFGDVPMKIKATATDADITNIA
KTPKADVLKQIVADLKLAEGYAVDTYNNNTFDKGRVTKYTVYAVEADVYLWLDDYANCIA
AADKIINSNKFALVPGNSAWFNTLFANGNSVEGIFELQFDQQILNPYYAMFTTSKRRYIA
ASNVLSDIYTIDPQKADNIDIRGINAAVRPSDQSIYKYLGISDDVARTSDGSYAHWIFYR
YADILLLKAEACINSGRGQDALDIIQQIRQRGHALSFSEESPLPDDVAGLTDYLVKERAR
EFAYEGKRWYDLLRVAKRNNYERMDILREAVLNSVPPSVQQSALNKLKDPNSHYLPIFYT
EIQNDPLLIQNPFYK